26 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010000430	E3 ubiquitin-protein ligase. (734 aa)
	ENSLCAP00010001523	V-ski avian sarcoma viral oncogene homolog a. (720 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)
	LOC108887878	Mothers against decapentaplegic homolog. (452 aa)
	LOC108887879	Mothers against decapentaplegic homolog. (506 aa)
	ENSLCAP00010004596	E2F_TDP domain-containing protein. (90 aa)
	LOC108899258	c-SKI_SMAD_bind domain-containing protein. (694 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	smad7	Mothers against decapentaplegic homolog. (376 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)
	smurf1	E3 ubiquitin-protein ligase. (729 aa)
	LOC108877407	FYVE-type domain-containing protein. (941 aa)
	LOC108897682	Zinc finger FYVE domain-containing protein. (1457 aa)
	smad6	Mothers against decapentaplegic homolog. (491 aa)
	smad3	Mothers against decapentaplegic homolog. (449 aa)
	LOC108878489	Mothers against decapentaplegic homolog. (467 aa)
	skil	c-SKI_SMAD_bind domain-containing protein. (772 aa)
	LOC108874998	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (509 aa)
	Smad1	Mothers against decapentaplegic homolog. (462 aa)
	ENSLCAP00010047215	Forkhead box H1. (339 aa)
	ENSLCAP00010051285	Uncharacterized protein. (938 aa)
	smad9	Mothers against decapentaplegic homolog. (469 aa)
	Zfyve9	Zinc finger, FYVE domain containing 9a. (1207 aa)
	LOC108878855	Mothers against decapentaplegic homolog. (471 aa)
	SMURF2	E3 ubiquitin-protein ligase. (776 aa)
	LOC108886018	Mothers against decapentaplegic homolog. (474 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000430	ENSLCAP00010001596	ENSLCAP00010000430	ENSLCAP00010001596	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.698
ENSLCAP00010000430	LOC108874998	ENSLCAP00010000430	ENSLCAP00010033730	E3 ubiquitin-protein ligase.	Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.	0.557
ENSLCAP00010000430	LOC108878489	ENSLCAP00010000430	ENSLCAP00010032926	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.692
ENSLCAP00010000430	LOC108878855	ENSLCAP00010000430	ENSLCAP00010054256	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.707
ENSLCAP00010000430	LOC108886018	ENSLCAP00010000430	ENSLCAP00010060462	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.692
ENSLCAP00010000430	LOC108887878	ENSLCAP00010000430	ENSLCAP00010002040	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.692
ENSLCAP00010000430	LOC108887879	ENSLCAP00010000430	ENSLCAP00010002054	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.981
ENSLCAP00010000430	LOC108896340	ENSLCAP00010000430	ENSLCAP00010011045	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.698
ENSLCAP00010000430	SMAD4	ENSLCAP00010000430	ENSLCAP00010013760	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.698
ENSLCAP00010000430	SMURF2	ENSLCAP00010000430	ENSLCAP00010055061	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
ENSLCAP00010000430	Smad1	ENSLCAP00010000430	ENSLCAP00010041718	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.699
ENSLCAP00010000430	smad3	ENSLCAP00010000430	ENSLCAP00010026768	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.692
ENSLCAP00010000430	smad6	ENSLCAP00010000430	ENSLCAP00010026438	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.981
ENSLCAP00010000430	smad7	ENSLCAP00010000430	ENSLCAP00010011180	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.984
ENSLCAP00010000430	smad9	ENSLCAP00010000430	ENSLCAP00010052953	E3 ubiquitin-protein ligase.	Mothers against decapentaplegic homolog.	0.699
ENSLCAP00010001523	ENSLCAP00010001596	ENSLCAP00010001523	ENSLCAP00010001596	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	LOC108878489	ENSLCAP00010001523	ENSLCAP00010032926	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108878855	ENSLCAP00010001523	ENSLCAP00010054256	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.730
ENSLCAP00010001523	LOC108886018	ENSLCAP00010001523	ENSLCAP00010060462	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108887878	ENSLCAP00010001523	ENSLCAP00010002040	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871