31 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ykt6	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	snap29	Uncharacterized protein. (259 aa)
	ENSLCAP00010004060	USO1 vesicle transport factor. (936 aa)
	vti1a	t-SNARE coiled-coil homology domain-containing protein. (224 aa)
	LOC108872932	Uncharacterized protein. (295 aa)
	stx17	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	napa	Uncharacterized protein. (295 aa)
	gosr2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	stx12	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	LOC108895481	V-SNARE coiled-coil homology domain-containing protein. (103 aa)
	vamp4	V-SNARE coiled-coil homology domain-containing protein. (156 aa)
	scfd1	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (647 aa)
	gosr1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
	LOC108892046	Uncharacterized protein. (745 aa)
	ENSLCAP00010031100	Uncharacterized protein. (289 aa)
	sec22a	Longin domain-containing protein; Belongs to the synaptobrevin family. (303 aa)
	NSF	Uncharacterized protein. (745 aa)
	bet1	t-SNARE coiled-coil homology domain-containing protein. (112 aa)
	bet1-2	BET1 homolog. (112 aa)
	stx7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (257 aa)
	stx5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (333 aa)
	GOSR1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (249 aa)
	vti1b	t-SNARE coiled-coil homology domain-containing protein. (227 aa)
	BET1L	t-SNARE coiled-coil homology domain-containing protein. (111 aa)
	LOC108883745	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	Stx8	Syntaxin 8. (242 aa)
	napg	TPR_REGION domain-containing protein. (311 aa)
	stx6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (255 aa)
	stx16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	LOC108878720	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	ENSLCAP00010059397	Uncharacterized protein. (103 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BET1L	ENSLCAP00010004060	ENSLCAP00010049790	ENSLCAP00010004060	t-SNARE coiled-coil homology domain-containing protein.	USO1 vesicle transport factor.	0.975
BET1L	ENSLCAP00010031100	ENSLCAP00010049790	ENSLCAP00010031100	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.755
BET1L	ENSLCAP00010059397	ENSLCAP00010049790	ENSLCAP00010059397	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.501
BET1L	GOSR1	ENSLCAP00010049790	ENSLCAP00010045725	t-SNARE coiled-coil homology domain-containing protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.960
BET1L	LOC108872932	ENSLCAP00010049790	ENSLCAP00010005183	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.755
BET1L	LOC108878720	ENSLCAP00010049790	ENSLCAP00010059394	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.501
BET1L	LOC108883745	ENSLCAP00010049790	ENSLCAP00010051382	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.982
BET1L	LOC108892046	ENSLCAP00010049790	ENSLCAP00010029690	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.721
BET1L	LOC108895481	ENSLCAP00010049790	ENSLCAP00010017082	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE coiled-coil homology domain-containing protein.	0.506
BET1L	NSF	ENSLCAP00010049790	ENSLCAP00010038595	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.721
BET1L	Stx8	ENSLCAP00010049790	ENSLCAP00010053147	t-SNARE coiled-coil homology domain-containing protein.	Syntaxin 8.	0.401
BET1L	bet1	ENSLCAP00010049790	ENSLCAP00010039568	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.946
BET1L	gosr1	ENSLCAP00010049790	ENSLCAP00010026755	t-SNARE coiled-coil homology domain-containing protein.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.989
BET1L	gosr2	ENSLCAP00010049790	ENSLCAP00010014388	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.996
BET1L	napa	ENSLCAP00010049790	ENSLCAP00010012464	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.755
BET1L	napg	ENSLCAP00010049790	ENSLCAP00010053467	t-SNARE coiled-coil homology domain-containing protein.	TPR_REGION domain-containing protein.	0.726
BET1L	scfd1	ENSLCAP00010049790	ENSLCAP00010024764	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.948
BET1L	sec22a	ENSLCAP00010049790	ENSLCAP00010037907	t-SNARE coiled-coil homology domain-containing protein.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.829
BET1L	stx12	ENSLCAP00010049790	ENSLCAP00010015807	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.742
BET1L	stx16	ENSLCAP00010049790	ENSLCAP00010055056	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.435