(5 nodes) Nucleotide-excision repair factor 1 complex, and Nucleotide-excision repair, DNA incision, 3-to lesion network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Ercc4	Excision repair cross-complementation group 4. (889 aa)
	xpa	XPA_C domain-containing protein. (340 aa)
	ercc5	Uncharacterized protein. (1138 aa)
	ENSLCAP00010027006	Basic, immunoglobulin-like variable motif containing. (473 aa)
	ercc1	Uncharacterized protein. (360 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010027006	Ercc4	ENSLCAP00010027006	ENSLCAP00010001551	Basic, immunoglobulin-like variable motif containing.	Excision repair cross-complementation group 4.	0.889
ENSLCAP00010027006	ercc1	ENSLCAP00010027006	ENSLCAP00010043845	Basic, immunoglobulin-like variable motif containing.	Uncharacterized protein.	0.861
ENSLCAP00010027006	ercc5	ENSLCAP00010027006	ENSLCAP00010021891	Basic, immunoglobulin-like variable motif containing.	Uncharacterized protein.	0.867
ENSLCAP00010027006	xpa	ENSLCAP00010027006	ENSLCAP00010019437	Basic, immunoglobulin-like variable motif containing.	XPA_C domain-containing protein.	0.845
Ercc4	ENSLCAP00010027006	ENSLCAP00010001551	ENSLCAP00010027006	Excision repair cross-complementation group 4.	Basic, immunoglobulin-like variable motif containing.	0.889
Ercc4	ercc1	ENSLCAP00010001551	ENSLCAP00010043845	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.999
Ercc4	ercc5	ENSLCAP00010001551	ENSLCAP00010021891	Excision repair cross-complementation group 4.	Uncharacterized protein.	0.944
Ercc4	xpa	ENSLCAP00010001551	ENSLCAP00010019437	Excision repair cross-complementation group 4.	XPA_C domain-containing protein.	0.989
ercc1	ENSLCAP00010027006	ENSLCAP00010043845	ENSLCAP00010027006	Uncharacterized protein.	Basic, immunoglobulin-like variable motif containing.	0.861
ercc1	Ercc4	ENSLCAP00010043845	ENSLCAP00010001551	Uncharacterized protein.	Excision repair cross-complementation group 4.	0.999
ercc1	ercc5	ENSLCAP00010043845	ENSLCAP00010021891	Uncharacterized protein.	Uncharacterized protein.	0.861
ercc1	xpa	ENSLCAP00010043845	ENSLCAP00010019437	Uncharacterized protein.	XPA_C domain-containing protein.	0.983
ercc5	ENSLCAP00010027006	ENSLCAP00010021891	ENSLCAP00010027006	Uncharacterized protein.	Basic, immunoglobulin-like variable motif containing.	0.867
ercc5	Ercc4	ENSLCAP00010021891	ENSLCAP00010001551	Uncharacterized protein.	Excision repair cross-complementation group 4.	0.944
ercc5	ercc1	ENSLCAP00010021891	ENSLCAP00010043845	Uncharacterized protein.	Uncharacterized protein.	0.861
ercc5	xpa	ENSLCAP00010021891	ENSLCAP00010019437	Uncharacterized protein.	XPA_C domain-containing protein.	0.925
xpa	ENSLCAP00010027006	ENSLCAP00010019437	ENSLCAP00010027006	XPA_C domain-containing protein.	Basic, immunoglobulin-like variable motif containing.	0.845
xpa	Ercc4	ENSLCAP00010019437	ENSLCAP00010001551	XPA_C domain-containing protein.	Excision repair cross-complementation group 4.	0.989
xpa	ercc1	ENSLCAP00010019437	ENSLCAP00010043845	XPA_C domain-containing protein.	Uncharacterized protein.	0.983
xpa	ercc5	ENSLCAP00010019437	ENSLCAP00010021891	XPA_C domain-containing protein.	Uncharacterized protein.	0.925