(5 nodes) Ku70:Ku80 complex, and DNA ligase IV complex network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Aplf	Uncharacterized protein. (395 aa)
	lig4	DNA ligase. (918 aa)
	LOC108895768	Uncharacterized protein. (356 aa)
	ENSLCAP00010051016	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (666 aa)
	xrcc6	Ku domain-containing protein. (617 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aplf	ENSLCAP00010051016	ENSLCAP00010025925	ENSLCAP00010051016	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.950
Aplf	LOC108895768	ENSLCAP00010025925	ENSLCAP00010047608	Uncharacterized protein.	Uncharacterized protein.	0.829
Aplf	lig4	ENSLCAP00010025925	ENSLCAP00010031670	Uncharacterized protein.	DNA ligase.	0.837
Aplf	xrcc6	ENSLCAP00010025925	ENSLCAP00010056776	Uncharacterized protein.	Ku domain-containing protein.	0.930
ENSLCAP00010051016	Aplf	ENSLCAP00010051016	ENSLCAP00010025925	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	Uncharacterized protein.	0.950
ENSLCAP00010051016	LOC108895768	ENSLCAP00010051016	ENSLCAP00010047608	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	Uncharacterized protein.	0.940
ENSLCAP00010051016	lig4	ENSLCAP00010051016	ENSLCAP00010031670	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	DNA ligase.	0.984
ENSLCAP00010051016	xrcc6	ENSLCAP00010051016	ENSLCAP00010056776	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	Ku domain-containing protein.	0.999
LOC108895768	Aplf	ENSLCAP00010047608	ENSLCAP00010025925	Uncharacterized protein.	Uncharacterized protein.	0.829
LOC108895768	ENSLCAP00010051016	ENSLCAP00010047608	ENSLCAP00010051016	Uncharacterized protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.940
LOC108895768	lig4	ENSLCAP00010047608	ENSLCAP00010031670	Uncharacterized protein.	DNA ligase.	0.995
LOC108895768	xrcc6	ENSLCAP00010047608	ENSLCAP00010056776	Uncharacterized protein.	Ku domain-containing protein.	0.958
lig4	Aplf	ENSLCAP00010031670	ENSLCAP00010025925	DNA ligase.	Uncharacterized protein.	0.837
lig4	ENSLCAP00010051016	ENSLCAP00010031670	ENSLCAP00010051016	DNA ligase.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.984
lig4	LOC108895768	ENSLCAP00010031670	ENSLCAP00010047608	DNA ligase.	Uncharacterized protein.	0.995
lig4	xrcc6	ENSLCAP00010031670	ENSLCAP00010056776	DNA ligase.	Ku domain-containing protein.	0.984
xrcc6	Aplf	ENSLCAP00010056776	ENSLCAP00010025925	Ku domain-containing protein.	Uncharacterized protein.	0.930
xrcc6	ENSLCAP00010051016	ENSLCAP00010056776	ENSLCAP00010051016	Ku domain-containing protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.999
xrcc6	LOC108895768	ENSLCAP00010056776	ENSLCAP00010047608	Ku domain-containing protein.	Uncharacterized protein.	0.958
xrcc6	lig4	ENSLCAP00010056776	ENSLCAP00010031670	Ku domain-containing protein.	DNA ligase.	0.984