(19 nodes) Mixed, incl. CCAAT-binding factor complex, and RFX-like DNA-binding protein network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010000605	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family. (317 aa)
	RFX7	Regulatory factor X7. (1303 aa)
	GPR139	G protein-coupled receptor 139. (361 aa)
	ciita	NACHT domain-containing protein. (1651 aa)
	dexi	Uncharacterized protein. (89 aa)
	nfya	Uncharacterized protein. (259 aa)
	LOC108884954	G_PROTEIN_RECEP_F1_2 domain-containing protein. (491 aa)
	ENSLCAP00010018789	Regulatory factor X7b. (1230 aa)
	ENSLCAP00010020285	Nuclear transcription factor Y, gamma. (328 aa)
	ENSLCAP00010021002	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1939 aa)
	rfxank	ANK_REP_REGION domain-containing protein. (236 aa)
	ENSLCAP00010036573	Im:7138239. (232 aa)
	nfyb	CBFD_NFYB_HMF domain-containing protein. (247 aa)
	ENSLCAP00010039404	LIM domain binding 3b. (276 aa)
	rfx5	RFX-type winged-helix domain-containing protein. (710 aa)
	LOC108880461	Uncharacterized protein. (804 aa)
	Rd3l	Uncharacterized protein. (248 aa)
	rfxap	RFXA_RFXANK_bdg domain-containing protein. (216 aa)
	LOC108875917	GATA-type domain-containing protein. (588 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000605	GPR139	ENSLCAP00010000605	ENSLCAP00010004029	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.	G protein-coupled receptor 139.	0.441
ENSLCAP00010000605	Rd3l	ENSLCAP00010000605	ENSLCAP00010050984	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.469
ENSLCAP00010000605	dexi	ENSLCAP00010000605	ENSLCAP00010005713	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.	Uncharacterized protein.	0.432
ENSLCAP00010018789	rfxank	ENSLCAP00010018789	ENSLCAP00010021986	Regulatory factor X7b.	ANK_REP_REGION domain-containing protein.	0.542
ENSLCAP00010018789	rfxap	ENSLCAP00010018789	ENSLCAP00010052933	Regulatory factor X7b.	RFXA_RFXANK_bdg domain-containing protein.	0.603
ENSLCAP00010020285	LOC108875917	ENSLCAP00010020285	ENSLCAP00010054380	Nuclear transcription factor Y, gamma.	GATA-type domain-containing protein.	0.509
ENSLCAP00010020285	nfya	ENSLCAP00010020285	ENSLCAP00010012136	Nuclear transcription factor Y, gamma.	Uncharacterized protein.	0.998
ENSLCAP00010020285	nfyb	ENSLCAP00010020285	ENSLCAP00010039090	Nuclear transcription factor Y, gamma.	CBFD_NFYB_HMF domain-containing protein.	0.998
ENSLCAP00010020285	rfx5	ENSLCAP00010020285	ENSLCAP00010046676	Nuclear transcription factor Y, gamma.	RFX-type winged-helix domain-containing protein.	0.420
ENSLCAP00010020285	rfxank	ENSLCAP00010020285	ENSLCAP00010021986	Nuclear transcription factor Y, gamma.	ANK_REP_REGION domain-containing protein.	0.560
ENSLCAP00010020285	rfxap	ENSLCAP00010020285	ENSLCAP00010052933	Nuclear transcription factor Y, gamma.	RFXA_RFXANK_bdg domain-containing protein.	0.408
ENSLCAP00010036573	LOC108875917	ENSLCAP00010036573	ENSLCAP00010054380	Im:7138239.	GATA-type domain-containing protein.	0.448
ENSLCAP00010036573	nfya	ENSLCAP00010036573	ENSLCAP00010012136	Im:7138239.	Uncharacterized protein.	0.937
ENSLCAP00010036573	nfyb	ENSLCAP00010036573	ENSLCAP00010039090	Im:7138239.	CBFD_NFYB_HMF domain-containing protein.	0.938
GPR139	ENSLCAP00010000605	ENSLCAP00010004029	ENSLCAP00010000605	G protein-coupled receptor 139.	Retinal pigment epithelium-derived rhodopsin homolog; Belongs to the G-protein coupled receptor 1 family.	0.441
GPR139	Rd3l	ENSLCAP00010004029	ENSLCAP00010050984	G protein-coupled receptor 139.	Uncharacterized protein.	0.621
GPR139	dexi	ENSLCAP00010004029	ENSLCAP00010005713	G protein-coupled receptor 139.	Uncharacterized protein.	0.593
GPR139	rfxap	ENSLCAP00010004029	ENSLCAP00010052933	G protein-coupled receptor 139.	RFXA_RFXANK_bdg domain-containing protein.	0.531
LOC108875917	ENSLCAP00010020285	ENSLCAP00010054380	ENSLCAP00010020285	GATA-type domain-containing protein.	Nuclear transcription factor Y, gamma.	0.509
LOC108875917	ENSLCAP00010036573	ENSLCAP00010054380	ENSLCAP00010036573	GATA-type domain-containing protein.	Im:7138239.	0.448