(14 nodes) YD repeat, and Galactose binding lectin domain network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010000729	Uncharacterized protein. (200 aa)
	ENSLCAP00010008172	Teneurin transmembrane protein 1. (2740 aa)
	tenm4	Uncharacterized protein. (2865 aa)
	tenm2	Uncharacterized protein. (2802 aa)
	ENSLCAP00010013218	SUEL-type lectin domain-containing protein. (109 aa)
	LOC108883395	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1518 aa)
	ENSLCAP00010024634	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (1707 aa)
	ENSLCAP00010033729	Uncharacterized protein. (2678 aa)
	ENSLCAP00010037184	Uncharacterized protein. (258 aa)
	LOC108886501	SUZ domain-containing protein. (160 aa)
	ENSLCAP00010041481	SUEL-type lectin domain-containing protein. (93 aa)
	ENSLCAP00010041490	SUEL-type lectin domain-containing protein. (146 aa)
	LOC108892841	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (407 aa)
	ENSLCAP00010047859	Teneurin transmembrane protein 3. (2691 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000729	ENSLCAP00010008172	ENSLCAP00010000729	ENSLCAP00010008172	Uncharacterized protein.	Teneurin transmembrane protein 1.	0.894
ENSLCAP00010000729	ENSLCAP00010033729	ENSLCAP00010000729	ENSLCAP00010033729	Uncharacterized protein.	Uncharacterized protein.	0.894
ENSLCAP00010000729	ENSLCAP00010047859	ENSLCAP00010000729	ENSLCAP00010047859	Uncharacterized protein.	Teneurin transmembrane protein 3.	0.894
ENSLCAP00010000729	LOC108886501	ENSLCAP00010000729	ENSLCAP00010040397	Uncharacterized protein.	SUZ domain-containing protein.	0.894
ENSLCAP00010000729	LOC108892841	ENSLCAP00010000729	ENSLCAP00010045959	Uncharacterized protein.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.894
ENSLCAP00010000729	tenm2	ENSLCAP00010000729	ENSLCAP00010011881	Uncharacterized protein.	Uncharacterized protein.	0.894
ENSLCAP00010000729	tenm4	ENSLCAP00010000729	ENSLCAP00010010018	Uncharacterized protein.	Uncharacterized protein.	0.894
ENSLCAP00010008172	ENSLCAP00010000729	ENSLCAP00010008172	ENSLCAP00010000729	Teneurin transmembrane protein 1.	Uncharacterized protein.	0.894
ENSLCAP00010008172	ENSLCAP00010013218	ENSLCAP00010008172	ENSLCAP00010013218	Teneurin transmembrane protein 1.	SUEL-type lectin domain-containing protein.	0.894
ENSLCAP00010008172	ENSLCAP00010024634	ENSLCAP00010008172	ENSLCAP00010024634	Teneurin transmembrane protein 1.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.894
ENSLCAP00010008172	ENSLCAP00010037184	ENSLCAP00010008172	ENSLCAP00010037184	Teneurin transmembrane protein 1.	Uncharacterized protein.	0.894
ENSLCAP00010008172	ENSLCAP00010041481	ENSLCAP00010008172	ENSLCAP00010041481	Teneurin transmembrane protein 1.	SUEL-type lectin domain-containing protein.	0.894
ENSLCAP00010008172	ENSLCAP00010041490	ENSLCAP00010008172	ENSLCAP00010041490	Teneurin transmembrane protein 1.	SUEL-type lectin domain-containing protein.	0.894
ENSLCAP00010008172	LOC108883395	ENSLCAP00010008172	ENSLCAP00010019247	Teneurin transmembrane protein 1.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.901
ENSLCAP00010013218	ENSLCAP00010008172	ENSLCAP00010013218	ENSLCAP00010008172	SUEL-type lectin domain-containing protein.	Teneurin transmembrane protein 1.	0.894
ENSLCAP00010013218	ENSLCAP00010033729	ENSLCAP00010013218	ENSLCAP00010033729	SUEL-type lectin domain-containing protein.	Uncharacterized protein.	0.894
ENSLCAP00010013218	ENSLCAP00010047859	ENSLCAP00010013218	ENSLCAP00010047859	SUEL-type lectin domain-containing protein.	Teneurin transmembrane protein 3.	0.894
ENSLCAP00010013218	LOC108886501	ENSLCAP00010013218	ENSLCAP00010040397	SUEL-type lectin domain-containing protein.	SUZ domain-containing protein.	0.894
ENSLCAP00010013218	LOC108892841	ENSLCAP00010013218	ENSLCAP00010045959	SUEL-type lectin domain-containing protein.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.894
ENSLCAP00010013218	tenm2	ENSLCAP00010013218	ENSLCAP00010011881	SUEL-type lectin domain-containing protein.	Uncharacterized protein.	0.894