(16 nodes) Mixed, incl. NURF complex, and E3 ubiquitin-protein ligase HECTD1/TRIP12-like network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010000207	Uncharacterized protein. (618 aa)
	ENSLCAP00010000227	Uncharacterized protein. (574 aa)
	cunh17orf49	Uncharacterized protein. (205 aa)
	ENSLCAP00010020841	Remodeling and spacing factor 1b, tandem duplicate 1. (1709 aa)
	LOC108882846	ANK_REP_REGION domain-containing protein. (2694 aa)
	ENSLCAP00010023739	HECT domain containing 1. (1378 aa)
	ENSLCAP00010025173	Uncharacterized protein. (187 aa)
	SETD2	Uncharacterized protein. (2683 aa)
	phf3	Uncharacterized protein. (1670 aa)
	trip12	Uncharacterized protein. (2062 aa)
	Ubr5	Ubiquitin protein ligase E3 component n-recognin 5. (2772 aa)
	Ubr3	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation. (1850 aa)
	ash1l	Uncharacterized protein. (2045 aa)
	LOC108879677	Uncharacterized protein. (177 aa)
	BPTF	Bromodomain PHD finger transcription factor. (2684 aa)
	USP34	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family. (2807 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BPTF	ENSLCAP00010020841	ENSLCAP00010054576	ENSLCAP00010020841	Bromodomain PHD finger transcription factor.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.691
BPTF	ENSLCAP00010025173	ENSLCAP00010054576	ENSLCAP00010025173	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.545
BPTF	LOC108879677	ENSLCAP00010054576	ENSLCAP00010054169	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.545
BPTF	SETD2	ENSLCAP00010054576	ENSLCAP00010027643	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.612
BPTF	USP34	ENSLCAP00010054576	ENSLCAP00010059487	Bromodomain PHD finger transcription factor.	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	0.482
BPTF	ash1l	ENSLCAP00010054576	ENSLCAP00010054056	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.558
BPTF	cunh17orf49	ENSLCAP00010054576	ENSLCAP00010009178	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.625
BPTF	phf3	ENSLCAP00010054576	ENSLCAP00010036909	Bromodomain PHD finger transcription factor.	Uncharacterized protein.	0.579
ENSLCAP00010000207	ENSLCAP00010000227	ENSLCAP00010000207	ENSLCAP00010000227	Uncharacterized protein.	Uncharacterized protein.	0.884
ENSLCAP00010000207	ENSLCAP00010020841	ENSLCAP00010000207	ENSLCAP00010020841	Uncharacterized protein.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.691
ENSLCAP00010000207	ENSLCAP00010025173	ENSLCAP00010000207	ENSLCAP00010025173	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSLCAP00010000207	LOC108879677	ENSLCAP00010000207	ENSLCAP00010054169	Uncharacterized protein.	Uncharacterized protein.	0.545
ENSLCAP00010000207	SETD2	ENSLCAP00010000207	ENSLCAP00010027643	Uncharacterized protein.	Uncharacterized protein.	0.612
ENSLCAP00010000207	USP34	ENSLCAP00010000207	ENSLCAP00010059487	Uncharacterized protein.	Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.	0.482
ENSLCAP00010000207	ash1l	ENSLCAP00010000207	ENSLCAP00010054056	Uncharacterized protein.	Uncharacterized protein.	0.558
ENSLCAP00010000207	cunh17orf49	ENSLCAP00010000207	ENSLCAP00010009178	Uncharacterized protein.	Uncharacterized protein.	0.625
ENSLCAP00010000207	phf3	ENSLCAP00010000207	ENSLCAP00010036909	Uncharacterized protein.	Uncharacterized protein.	0.579
ENSLCAP00010000227	ENSLCAP00010000207	ENSLCAP00010000227	ENSLCAP00010000207	Uncharacterized protein.	Uncharacterized protein.	0.884
ENSLCAP00010000227	ENSLCAP00010020841	ENSLCAP00010000227	ENSLCAP00010020841	Uncharacterized protein.	Remodeling and spacing factor 1b, tandem duplicate 1.	0.691
ENSLCAP00010000227	ENSLCAP00010025173	ENSLCAP00010000227	ENSLCAP00010025173	Uncharacterized protein.	Uncharacterized protein.	0.545