6 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108879766	G_PROTEIN_RECEP_F1_2 domain-containing protein. (502 aa)
	ENSLCAP00010005935	Guanine nucleotide binding protein (G protein), q polypeptide. (374 aa)
	LOC108881885	G_PROTEIN_RECEP_F1_2 domain-containing protein. (577 aa)
	htr2b	G_PROTEIN_RECEP_F1_2 domain-containing protein. (473 aa)
	PLCB1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes. (1244 aa)
	LOC108881412	Uncharacterized protein. (402 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010005935	LOC108879766	ENSLCAP00010005935	ENSLCAP00010003598	Guanine nucleotide binding protein (G protein), q polypeptide.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.915
ENSLCAP00010005935	LOC108881412	ENSLCAP00010005935	ENSLCAP00010058221	Guanine nucleotide binding protein (G protein), q polypeptide.	Uncharacterized protein.	0.901
ENSLCAP00010005935	LOC108881885	ENSLCAP00010005935	ENSLCAP00010012660	Guanine nucleotide binding protein (G protein), q polypeptide.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.915
ENSLCAP00010005935	PLCB1	ENSLCAP00010005935	ENSLCAP00010029340	Guanine nucleotide binding protein (G protein), q polypeptide.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.954
ENSLCAP00010005935	htr2b	ENSLCAP00010005935	ENSLCAP00010024418	Guanine nucleotide binding protein (G protein), q polypeptide.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.915
LOC108879766	ENSLCAP00010005935	ENSLCAP00010003598	ENSLCAP00010005935	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.915
LOC108879766	LOC108881412	ENSLCAP00010003598	ENSLCAP00010058221	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.949
LOC108879766	LOC108881885	ENSLCAP00010003598	ENSLCAP00010012660	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.982
LOC108879766	PLCB1	ENSLCAP00010003598	ENSLCAP00010029340	G_PROTEIN_RECEP_F1_2 domain-containing protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.451
LOC108879766	htr2b	ENSLCAP00010003598	ENSLCAP00010024418	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.973
LOC108881412	ENSLCAP00010005935	ENSLCAP00010058221	ENSLCAP00010005935	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.901
LOC108881412	LOC108879766	ENSLCAP00010058221	ENSLCAP00010003598	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.949
LOC108881412	LOC108881885	ENSLCAP00010058221	ENSLCAP00010012660	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.950
LOC108881412	PLCB1	ENSLCAP00010058221	ENSLCAP00010029340	Uncharacterized protein.	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	0.961
LOC108881412	htr2b	ENSLCAP00010058221	ENSLCAP00010024418	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.956
LOC108881885	ENSLCAP00010005935	ENSLCAP00010012660	ENSLCAP00010005935	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.915
LOC108881885	LOC108879766	ENSLCAP00010012660	ENSLCAP00010003598	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.982
LOC108881885	LOC108881412	ENSLCAP00010012660	ENSLCAP00010058221	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.950
LOC108881885	htr2b	ENSLCAP00010012660	ENSLCAP00010024418	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.965
PLCB1	ENSLCAP00010005935	ENSLCAP00010029340	ENSLCAP00010005935	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase; The production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) is mediated by activated phosphatidylinositol-specific phospholipase C enzymes.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.954