(10 nodes) Opsins network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108892944	G_PROTEIN_RECEP_F1_2 domain-containing protein. (391 aa)
	LOC108885821	G_PROTEIN_RECEP_F1_2 domain-containing protein. (417 aa)
	opn3	G_PROTEIN_RECEP_F1_2 domain-containing protein. (400 aa)
	ENSLCAP00010022999	Opsin 8, group member b. (220 aa)
	Opn1sw	Opsin 1 (cone pigments), short-wave-sensitive 1. (326 aa)
	LOC108880363	G_PROTEIN_RECEP_F1_2 domain-containing protein. (335 aa)
	LOC108885579	G_PROTEIN_RECEP_F1_2 domain-containing protein. (357 aa)
	LOC108885586	G_PROTEIN_RECEP_F1_2 domain-containing protein. (351 aa)
	ENSLCAP00010043129	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (319 aa)
	LOC108894079	Arrestin_C domain-containing protein. (355 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010022999	ENSLCAP00010043129	ENSLCAP00010022999	ENSLCAP00010043129	Opsin 8, group member b.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.553
ENSLCAP00010022999	LOC108880363	ENSLCAP00010022999	ENSLCAP00010034115	Opsin 8, group member b.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.428
ENSLCAP00010043129	ENSLCAP00010022999	ENSLCAP00010043129	ENSLCAP00010022999	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Opsin 8, group member b.	0.553
ENSLCAP00010043129	LOC108880363	ENSLCAP00010043129	ENSLCAP00010034115	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.677
ENSLCAP00010043129	LOC108885586	ENSLCAP00010043129	ENSLCAP00010041336	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.494
ENSLCAP00010043129	LOC108885821	ENSLCAP00010043129	ENSLCAP00010011959	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.462
ENSLCAP00010043129	Opn1sw	ENSLCAP00010043129	ENSLCAP00010024257	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Opsin 1 (cone pigments), short-wave-sensitive 1.	0.468
ENSLCAP00010043129	opn3	ENSLCAP00010043129	ENSLCAP00010018954	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.457
LOC108880363	ENSLCAP00010022999	ENSLCAP00010034115	ENSLCAP00010022999	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 8, group member b.	0.428
LOC108880363	ENSLCAP00010043129	ENSLCAP00010034115	ENSLCAP00010043129	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.677
LOC108880363	LOC108885579	ENSLCAP00010034115	ENSLCAP00010041136	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.592
LOC108880363	LOC108885586	ENSLCAP00010034115	ENSLCAP00010041336	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.523
LOC108880363	LOC108885821	ENSLCAP00010034115	ENSLCAP00010011959	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.598
LOC108880363	LOC108892944	ENSLCAP00010034115	ENSLCAP00010001182	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.624
LOC108880363	Opn1sw	ENSLCAP00010034115	ENSLCAP00010024257	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 1 (cone pigments), short-wave-sensitive 1.	0.530
LOC108880363	opn3	ENSLCAP00010034115	ENSLCAP00010018954	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.643
LOC108885579	LOC108880363	ENSLCAP00010041136	ENSLCAP00010034115	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.592
LOC108885579	LOC108885586	ENSLCAP00010041136	ENSLCAP00010041336	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.501
LOC108885579	LOC108885821	ENSLCAP00010041136	ENSLCAP00010011959	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.410
LOC108885579	Opn1sw	ENSLCAP00010041136	ENSLCAP00010024257	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Opsin 1 (cone pigments), short-wave-sensitive 1.	0.520