STRINGSTRING
nvl nvl rsl1d1 rsl1d1 Znf622 Znf622 nmd3 nmd3 Gtpbp4 Gtpbp4 utp15 utp15 surf6 surf6 wdr75 wdr75 ENSLCAP00010003662 ENSLCAP00010003662 rpf2 rpf2 EIF6 EIF6 ngdn ngdn utp11 utp11 gnl2 gnl2 rrp15 rrp15 ENSLCAP00010007664 ENSLCAP00010007664 ENSLCAP00010008537 ENSLCAP00010008537 sdad1 sdad1 rcl1 rcl1 gnl1 gnl1 ENSLCAP00010010685 ENSLCAP00010010685 nol10 nol10 Brix1 Brix1 ENSLCAP00010011529 ENSLCAP00010011529 Fbl Fbl ddx54 ddx54 nop14 nop14 Pwp1 Pwp1 ENSLCAP00010013748 ENSLCAP00010013748 ENSLCAP00010013755 ENSLCAP00010013755 Wdr36 Wdr36 Mcc Mcc snu13 snu13 ENSLCAP00010015403 ENSLCAP00010015403 bud23 bud23 nop9 nop9 Aatf Aatf Nob1 Nob1 NAT10 NAT10 Cep152 Cep152 ENSLCAP00010018102 ENSLCAP00010018102 rsl24d1 rsl24d1 ENSLCAP00010019097 ENSLCAP00010019097 grwd1 grwd1 lyar lyar rrp9 rrp9 Wdr46 Wdr46 ddx52 ddx52 Nle1 Nle1 LOC108873066 LOC108873066 LOC108901883 LOC108901883 emg1 emg1 nop2 nop2 gcc1 gcc1 Noc4l Noc4l Ddx55 Ddx55 ENSLCAP00010023652 ENSLCAP00010023652 cebpz cebpz rbm34 rbm34 ENSLCAP00010024803 ENSLCAP00010024803 Esf1 Esf1 ENSLCAP00010025268 ENSLCAP00010025268 ENSLCAP00010025482 ENSLCAP00010025482 ENSLCAP00010025535 ENSLCAP00010025535 CSNK1D CSNK1D nol12 nol12 rrp7a rrp7a Ddx47 Ddx47 rrp8 rrp8 rrs1 rrs1 lsg1 lsg1 ENSLCAP00010028541 ENSLCAP00010028541 tbl3 tbl3 pno1 pno1 bop1 bop1 ENSLCAP00010030192 ENSLCAP00010030192 ENSLCAP00010030349 ENSLCAP00010030349 ENSLCAP00010030480 ENSLCAP00010030480 LOC108897145 LOC108897145 LOC108897142 LOC108897142 Ddx49 Ddx49 nifk nifk ENSLCAP00010032078 ENSLCAP00010032078 nop53 nop53 dcaf13 dcaf13 Ddx18 Ddx18 LOC108881275 LOC108881275 Krr1 Krr1 pum3 pum3 WDR12 WDR12 ENSLCAP00010038117 ENSLCAP00010038117 abt1 abt1 ENSLCAP00010038797 ENSLCAP00010038797 bysl bysl utp23 utp23 ENSLCAP00010040839 ENSLCAP00010040839 mphosph10 mphosph10 fcf1 fcf1 ddx56 ddx56 nsa2 nsa2 mrto4 mrto4 utp4 utp4 ENSLCAP00010045035 ENSLCAP00010045035 kri1 kri1 znf593 znf593 Dhx32 Dhx32 ENSLCAP00010047246 ENSLCAP00010047246 ENSLCAP00010047480 ENSLCAP00010047480 Ddx24 Ddx24 ftsj3 ftsj3 utp25 utp25 glmn glmn LOC108876550 LOC108876550 ENSLCAP00010049501 ENSLCAP00010049501 ENSLCAP00010049894 ENSLCAP00010049894 ENSLCAP00010050097 ENSLCAP00010050097 nom1 nom1 ENSLCAP00010050308 ENSLCAP00010050308 nsun6 nsun6 ENSLCAP00010050927 ENSLCAP00010050927 imp3 imp3 ENSLCAP00010051751 ENSLCAP00010051751 ddx31 ddx31 imp4 imp4 Ebna1bp2 Ebna1bp2 Riok3 Riok3 Utp6 Utp6 Pak1ip1 Pak1ip1 nip7 nip7 rtca rtca ENSLCAP00010055611 ENSLCAP00010055611 ENSLCAP00010055615 ENSLCAP00010055615 ddx10 ddx10 ENSLCAP00010057050 ENSLCAP00010057050 noc3l noc3l gclm gclm retreg2 retreg2 Tsr1 Tsr1 ENSLCAP00010058439 ENSLCAP00010058439 Ltv1 Ltv1 nol6 nol6 dimt1 dimt1 riok2 riok2 ENSLCAP00010060583 ENSLCAP00010060583 pes1 pes1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
nvlUncharacterized protein. (866 aa)
rsl1d1Uncharacterized protein. (377 aa)
Znf622Zinc finger protein 622. (467 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (515 aa)
Gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (636 aa)
utp15WD_REPEATS_REGION domain-containing protein. (531 aa)
surf6SURF6 domain-containing protein. (360 aa)
wdr75Uncharacterized protein. (837 aa)
ENSLCAP00010003662Methyltransf_25 domain-containing protein. (244 aa)
rpf2Brix domain-containing protein. (308 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (234 aa)
ngdnUncharacterized protein. (319 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (730 aa)
rrp15Uncharacterized protein. (256 aa)
ENSLCAP00010007664Programmed cell death 11. (868 aa)
ENSLCAP00010008537Ribosomal RNA processing 12 homolog. (1237 aa)
sdad1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (686 aa)
rcl1Uncharacterized protein. (372 aa)
gnl1CP-type G domain-containing protein. (611 aa)
ENSLCAP00010010685NOC2-like nucleolar associated transcriptional repressor. (745 aa)
nol10NUC153 domain-containing protein. (757 aa)
Brix1Brix domain containing 2. (351 aa)
ENSLCAP00010011529Uncharacterized protein. (190 aa)
FblFibrillarin. (266 aa)
ddx54ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (867 aa)
nop14Uncharacterized protein. (1153 aa)
Pwp1PWP1 homolog, endonuclein. (487 aa)
ENSLCAP00010013748Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (575 aa)
ENSLCAP00010013755Ribosomal RNA processing 36. (267 aa)
Wdr36WD repeat domain 36. (901 aa)
MccMCC-bdg_PDZ domain-containing protein. (512 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
ENSLCAP00010015403NOP56 ribonucleoprotein homolog. (564 aa)
bud23Uncharacterized protein. (282 aa)
nop9Uncharacterized protein. (616 aa)
AatfUncharacterized protein. (88 aa)
Nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (497 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1038 aa)
Cep152Centrosomal protein 152. (1525 aa)
ENSLCAP00010018102Glomulin, FKBP associated protein b. (544 aa)
rsl24d1TRASH domain-containing protein. (164 aa)
ENSLCAP00010019097Premelanosome protein b. (652 aa)
grwd1WD_REPEATS_REGION domain-containing protein. (453 aa)
lyarzf-LYAR domain-containing protein. (348 aa)
rrp9WD_REPEATS_REGION domain-containing protein. (503 aa)
Wdr46WD repeat domain 46. (572 aa)
ddx52Uncharacterized protein. (687 aa)
Nle1Notchless homolog 1 (Drosophila). (486 aa)
LOC108873066Uncharacterized protein. (926 aa)
LOC108901883ZP domain-containing protein. (400 aa)
emg1Uncharacterized protein. (237 aa)
nop2SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (790 aa)
gcc1GRIP domain-containing protein. (774 aa)
Noc4lNucleolar complex associated 4 homolog. (537 aa)
Ddx55DEAD (Asp-Glu-Ala-Asp) box polypeptide 55; Belongs to the DEAD box helicase family. (589 aa)
ENSLCAP00010023652Uncharacterized protein; Belongs to the DEAD box helicase family. (619 aa)
cebpzCBF domain-containing protein. (1127 aa)
rbm34Uncharacterized protein. (433 aa)
ENSLCAP00010024803RNA binding motif protein 28. (748 aa)
Esf1ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (602 aa)
ENSLCAP00010025268Guanine nucleotide binding protein-like 3 (nucleolar). (493 aa)
ENSLCAP00010025482NUC153 domain-containing protein. (231 aa)
ENSLCAP00010025535DEAH (Asp-Glu-Ala-His) box polypeptide 32b. (717 aa)
CSNK1DProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (422 aa)
nol12Uncharacterized protein. (234 aa)
rrp7aUncharacterized protein. (293 aa)
Ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (486 aa)
rrp8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (569 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
lsg1CP-type G domain-containing protein. (642 aa)
ENSLCAP00010028541annotation not available (244 aa)
tbl3WD_REPEATS_REGION domain-containing protein. (942 aa)
pno1KH domain-containing protein. (248 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (759 aa)
ENSLCAP00010030192Uncharacterized protein. (280 aa)
ENSLCAP00010030349Protein MAK16 homolog; Belongs to the MAK16 family. (339 aa)
ENSLCAP00010030480UTP20 small subunit (SSU) processome component. (2739 aa)
LOC108897145Uncharacterized protein. (786 aa)
LOC108897142Uncharacterized protein. (750 aa)
Ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (493 aa)
nifkRRM domain-containing protein. (294 aa)
ENSLCAP00010032078PIN2 (TERF1) interacting telomerase inhibitor 1. (221 aa)
nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (465 aa)
dcaf13WD_REPEATS_REGION domain-containing protein. (445 aa)
Ddx18RNA helicase. (697 aa)
LOC108881275Brix domain-containing protein. (357 aa)
Krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (389 aa)
pum3PUM-HD domain-containing protein. (657 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (404 aa)
ENSLCAP00010038117NOP58 ribonucleoprotein homolog (yeast). (566 aa)
abt1Uncharacterized protein. (267 aa)
ENSLCAP00010038797Proliferation-associated 2G4, a. (390 aa)
byslUncharacterized protein. (436 aa)
utp23Uncharacterized protein. (254 aa)
ENSLCAP00010040839Guanine nucleotide binding protein-like 3 (nucleolar)-like. (534 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (689 aa)
fcf1PINc domain-containing protein. (235 aa)
ddx56Uncharacterized protein. (571 aa)
nsa2Uncharacterized protein. (260 aa)
mrto4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (240 aa)
utp4WD_REPEATS_REGION domain-containing protein. (685 aa)
ENSLCAP00010045035Ribosome production factor 1 homolog. (371 aa)
kri1Kri1_C domain-containing protein. (771 aa)
znf593C2H2-type domain-containing protein. (129 aa)
Dhx32DEAH (Asp-Glu-Ala-His) box polypeptide 32a. (357 aa)
ENSLCAP00010047246WD repeat domain 43. (597 aa)
ENSLCAP00010047480WD_REPEATS_REGION domain-containing protein. (483 aa)
Ddx24DEAD (Asp-Glu-Ala-Asp) box helicase 24. (871 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (861 aa)
utp25INTEIN_C_TER domain-containing protein. (765 aa)
glmnUncharacterized protein. (601 aa)
LOC108876550Peptidase_M24 domain-containing protein. (394 aa)
ENSLCAP00010049501Protein kinase domain-containing protein. (90 aa)
ENSLCAP00010049894Nexilin (F actin binding protein). (815 aa)
ENSLCAP00010050097WD repeat domain 74. (383 aa)
nom1MI domain-containing protein. (839 aa)
ENSLCAP00010050308BMS1 ribosome biogenesis factor. (1235 aa)
nsun6Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (461 aa)
ENSLCAP00010050927DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family. (760 aa)
imp3S4 RNA-binding domain-containing protein. (183 aa)
ENSLCAP00010051751UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae). (378 aa)
ddx31RNA helicase. (717 aa)
imp4Brix domain-containing protein. (291 aa)
Ebna1bp2EBNA1 binding protein 2. (295 aa)
Riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (498 aa)
Utp6Uncharacterized protein. (95 aa)
Pak1ip1PAK1 interacting protein 1. (363 aa)
nip760S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 34S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
rtcaUncharacterized protein. (370 aa)
ENSLCAP00010055611Peter pan homolog. (535 aa)
ENSLCAP00010055615Purinergic receptor P2Y11; Belongs to the G-protein coupled receptor 1 family. (306 aa)
ddx10RNA helicase. (851 aa)
ENSLCAP00010057050WD repeat domain 3. (943 aa)
noc3lNucleolar complex protein 3 homolog. (807 aa)
gclmFcf2 domain-containing protein. (911 aa)
retreg2Uncharacterized protein. (589 aa)
Tsr1TSR1, 20S rRNA accumulation, homolog (S. cerevisiae). (841 aa)
ENSLCAP00010058439WD_REPEATS_REGION domain-containing protein. (417 aa)
Ltv1LTV1 ribosome biogenesis factor. (460 aa)
nol6Nucleolar protein 6. (1143 aa)
dimt1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (306 aa)
riok2RIO domain-containing protein. (519 aa)
ENSLCAP00010060583RNA binding motif protein 19. (943 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (586 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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