33 items (Lates calcarifer) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Your Input:
	trmt112	Uncharacterized protein. (123 aa)
	ENSLCAP00010019565	Ribosomal RNA adenine dimethylase domain containing 1. (185 aa)
	fdxacb1	FDX-ACB domain-containing protein. (652 aa)
	Trmt2b	tRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (483 aa)
	emg1	Uncharacterized protein. (237 aa)
	nop2	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (790 aa)
	ENSLCAP00010024372	zf-GRF domain-containing protein. (160 aa)
	ENSLCAP00010024382	Zinc finger, CCHC domain containing 4. (266 aa)
	ENSLCAP00010024646	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (452 aa)
	tfb1m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (354 aa)
	ENSLCAP00010031003	Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae). (120 aa)
	LOC108886513	PseudoU_synth_2 domain-containing protein. (380 aa)
	nsun5	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (490 aa)
	Rpusd1	RNA pseudouridine synthase domain containing 1. (306 aa)
	ENSLCAP00010009029	zf-GRF domain-containing protein. (520 aa)
	nop10	Uncharacterized protein. (64 aa)
	nhp2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (159 aa)
	nsun3	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (466 aa)
	mettl15	Uncharacterized protein. (391 aa)
	Fbl	Fibrillarin. (266 aa)
	mrm2	FtsJ domain-containing protein. (239 aa)
	bud23	Uncharacterized protein. (282 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1038 aa)
	dimt1	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (306 aa)
	tfb2m	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (451 aa)
	Tsr3	Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (250 aa)
	mettl5	MTS domain-containing protein. (220 aa)
	Rpusd2	RNA pseudouridine synthase domain containing 2. (371 aa)
	nsun4	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (401 aa)
	dkc1	PUA domain-containing protein. (507 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (861 aa)
	trmt61b	Uncharacterized protein. (492 aa)
	Gar1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (222 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010009029	ENSLCAP00010024646	ENSLCAP00010009029	ENSLCAP00010024646	zf-GRF domain-containing protein.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.450
ENSLCAP00010009029	dimt1	ENSLCAP00010009029	ENSLCAP00010060425	zf-GRF domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.418
ENSLCAP00010009029	mettl5	ENSLCAP00010009029	ENSLCAP00010051845	zf-GRF domain-containing protein.	MTS domain-containing protein.	0.450
ENSLCAP00010009029	trmt112	ENSLCAP00010009029	ENSLCAP00010042960	zf-GRF domain-containing protein.	Uncharacterized protein.	0.416
ENSLCAP00010024372	ENSLCAP00010024382	ENSLCAP00010024372	ENSLCAP00010024382	zf-GRF domain-containing protein.	Zinc finger, CCHC domain containing 4.	0.912
ENSLCAP00010024372	ENSLCAP00010024646	ENSLCAP00010024372	ENSLCAP00010024646	zf-GRF domain-containing protein.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.450
ENSLCAP00010024372	dimt1	ENSLCAP00010024372	ENSLCAP00010060425	zf-GRF domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.418
ENSLCAP00010024372	mettl5	ENSLCAP00010024372	ENSLCAP00010051845	zf-GRF domain-containing protein.	MTS domain-containing protein.	0.450
ENSLCAP00010024372	trmt112	ENSLCAP00010024372	ENSLCAP00010042960	zf-GRF domain-containing protein.	Uncharacterized protein.	0.416
ENSLCAP00010024382	ENSLCAP00010024372	ENSLCAP00010024382	ENSLCAP00010024372	Zinc finger, CCHC domain containing 4.	zf-GRF domain-containing protein.	0.912
ENSLCAP00010024382	ENSLCAP00010024646	ENSLCAP00010024382	ENSLCAP00010024646	Zinc finger, CCHC domain containing 4.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.450
ENSLCAP00010024382	dimt1	ENSLCAP00010024382	ENSLCAP00010060425	Zinc finger, CCHC domain containing 4.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.418
ENSLCAP00010024382	mettl5	ENSLCAP00010024382	ENSLCAP00010051845	Zinc finger, CCHC domain containing 4.	MTS domain-containing protein.	0.450
ENSLCAP00010024382	trmt112	ENSLCAP00010024382	ENSLCAP00010042960	Zinc finger, CCHC domain containing 4.	Uncharacterized protein.	0.416
ENSLCAP00010024646	ENSLCAP00010009029	ENSLCAP00010024646	ENSLCAP00010009029	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	zf-GRF domain-containing protein.	0.450
ENSLCAP00010024646	ENSLCAP00010024372	ENSLCAP00010024646	ENSLCAP00010024372	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	zf-GRF domain-containing protein.	0.450
ENSLCAP00010024646	ENSLCAP00010024382	ENSLCAP00010024646	ENSLCAP00010024382	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Zinc finger, CCHC domain containing 4.	0.450
ENSLCAP00010024646	ENSLCAP00010031003	ENSLCAP00010024646	ENSLCAP00010031003	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae).	0.475
ENSLCAP00010024646	dimt1	ENSLCAP00010024646	ENSLCAP00010060425	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.589
ENSLCAP00010024646	mettl15	ENSLCAP00010024646	ENSLCAP00010041810	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	Uncharacterized protein.	0.582