49 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	snx30	PX domain-containing protein. (443 aa)
	Sqstm1	Sequestosome 1. (341 aa)
	ENSLCAP00010002741	Prohibitin. (349 aa)
	Cisd2	CDGSH iron sulfur domain 2. (139 aa)
	Map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (112 aa)
	GABARAPL2	GABA type A receptor associated protein like 2. (135 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108883363	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (810 aa)
	rb1cc1	ATG11 domain-containing protein. (1651 aa)
	ulk2	Protein kinase domain-containing protein. (1040 aa)
	cunh5orf51	Uncharacterized protein. (306 aa)
	PHB2	Prohibitin 2. (374 aa)
	gabarap	Uncharacterized protein. (122 aa)
	atg3	Autophagy-related protein 3. (318 aa)
	ENSLCAP00010020326	Uncharacterized protein. (123 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	LOC108879275	Protein kinase domain-containing protein. (1026 aa)
	map1lc3c	Uncharacterized protein. (128 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	WIPI1	WD repeat domain, phosphoinositide interacting 1. (405 aa)
	ENSLCAP00010031439	Microtubule-associated protein 1 light chain 3 beta. (135 aa)
	ogt	TPR_REGION domain-containing protein. (1111 aa)
	ENSLCAP00010031904	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (459 aa)
	fbxl4	F-box domain-containing protein. (613 aa)
	ENSLCAP00010035056	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (888 aa)
	spata18	MIEAP domain-containing protein. (534 aa)
	pink1	Protein kinase domain-containing protein. (575 aa)
	Fundc1	Uncharacterized protein. (233 aa)
	ENSLCAP00010038893	GABA(A) receptor-associated protein like 2. (157 aa)
	LOC108898450	PX domain-containing protein. (423 aa)
	taz	Tafazzin family protein; Belongs to the taffazin family. (264 aa)
	Wdr45b	WD repeat domain 45B. (334 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (541 aa)
	Atg2a	Autophagy related 2A. (1981 aa)
	ATG2B	Uncharacterized protein. (2076 aa)
	atg7	Uncharacterized protein. (738 aa)
	ENSLCAP00010044319	PX domain-containing protein. (377 aa)
	ENSLCAP00010045258	F-box protein 7. (471 aa)
	LOC108874357	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (463 aa)
	ENSLCAP00010049229	Prohibitin. (283 aa)
	Wdr45	WD repeat domain 45. (359 aa)
	ENSLCAP00010051333	Unc-51 like autophagy activating kinase 1a. (797 aa)
	pink1-2	Serine/threonine-protein kinase PINK1, mitochondrial-like. (575 aa)
	FUNDC1	Uncharacterized protein. (158 aa)
	LOC108888563	PX domain-containing protein. (301 aa)
	atg14	Galectin domain-containing protein. (555 aa)
	usp30	Ubiquitin carboxyl-terminal hydrolase. (508 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	Atg12	ENSLCAP00010043755	ENSLCAP00010021188	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	Atg2a	ENSLCAP00010043755	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.909
ATG2B	Atg4b	ENSLCAP00010043755	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.585
ATG2B	ENSLCAP00010025602	ENSLCAP00010043755	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	ENSLCAP00010035056	ENSLCAP00010043755	ENSLCAP00010035056	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	ENSLCAP00010051333	ENSLCAP00010043755	ENSLCAP00010051333	Uncharacterized protein.	Unc-51 like autophagy activating kinase 1a.	0.807
ATG2B	LOC108879275	ENSLCAP00010043755	ENSLCAP00010024436	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
ATG2B	LOC108883363	ENSLCAP00010043755	ENSLCAP00010009423	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	LOC108891182	ENSLCAP00010043755	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	Sqstm1	ENSLCAP00010043755	ENSLCAP00010000923	Uncharacterized protein.	Sequestosome 1.	0.435
ATG2B	WIPI1	ENSLCAP00010043755	ENSLCAP00010025748	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 1.	0.822
ATG2B	Wdr45	ENSLCAP00010043755	ENSLCAP00010051205	Uncharacterized protein.	WD repeat domain 45.	0.655
ATG2B	Wdr45b	ENSLCAP00010043755	ENSLCAP00010041803	Uncharacterized protein.	WD repeat domain 45B.	0.647
ATG2B	Wipi2	ENSLCAP00010043755	ENSLCAP00010020957	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 2.	0.981
ATG2B	atg13	ENSLCAP00010043755	ENSLCAP00010041989	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.557
ATG2B	atg14	ENSLCAP00010043755	ENSLCAP00010059166	Uncharacterized protein.	Galectin domain-containing protein.	0.522
ATG2B	atg3	ENSLCAP00010043755	ENSLCAP00010018189	Uncharacterized protein.	Autophagy-related protein 3.	0.574
ATG2B	atg7	ENSLCAP00010043755	ENSLCAP00010043910	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	rb1cc1	ENSLCAP00010043755	ENSLCAP00010010849	Uncharacterized protein.	ATG11 domain-containing protein.	0.612
ATG2B	ulk2	ENSLCAP00010043755	ENSLCAP00010011399	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979