15 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010020326	Uncharacterized protein. (123 aa)
	atg14	Galectin domain-containing protein. (555 aa)
	pink1-2	Serine/threonine-protein kinase PINK1, mitochondrial-like. (575 aa)
	ENSLCAP00010049229	Prohibitin. (283 aa)
	LOC108874357	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (463 aa)
	atg13	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily. (541 aa)
	taz	Tafazzin family protein; Belongs to the taffazin family. (264 aa)
	pink1	Protein kinase domain-containing protein. (575 aa)
	ENSLCAP00010031904	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (459 aa)
	ogt	TPR_REGION domain-containing protein. (1111 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	PHB2	Prohibitin 2. (374 aa)
	cunh5orf51	Uncharacterized protein. (306 aa)
	ENSLCAP00010002741	Prohibitin. (349 aa)
	Sqstm1	Sequestosome 1. (341 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg4b	Sqstm1	ENSLCAP00010022767	ENSLCAP00010000923	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Sequestosome 1.	0.448
Atg4b	atg13	ENSLCAP00010022767	ENSLCAP00010041989	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.666
Atg4b	atg14	ENSLCAP00010022767	ENSLCAP00010059166	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	Galectin domain-containing protein.	0.651
ENSLCAP00010020326	ENSLCAP00010031904	ENSLCAP00010020326	ENSLCAP00010031904	Uncharacterized protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.816
ENSLCAP00010020326	LOC108874357	ENSLCAP00010020326	ENSLCAP00010048920	Uncharacterized protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.816
ENSLCAP00010020326	atg13	ENSLCAP00010020326	ENSLCAP00010041989	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Metazoan subfamily.	0.467
ENSLCAP00010020326	atg14	ENSLCAP00010020326	ENSLCAP00010059166	Uncharacterized protein.	Galectin domain-containing protein.	0.433
ENSLCAP00010020326	pink1	ENSLCAP00010020326	ENSLCAP00010035987	Uncharacterized protein.	Protein kinase domain-containing protein.	0.628
ENSLCAP00010020326	pink1-2	ENSLCAP00010020326	ENSLCAP00010052377	Uncharacterized protein.	Serine/threonine-protein kinase PINK1, mitochondrial-like.	0.628
ENSLCAP00010031904	ENSLCAP00010020326	ENSLCAP00010031904	ENSLCAP00010020326	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Uncharacterized protein.	0.816
ENSLCAP00010031904	Sqstm1	ENSLCAP00010031904	ENSLCAP00010000923	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Sequestosome 1.	0.892
ENSLCAP00010031904	pink1	ENSLCAP00010031904	ENSLCAP00010035987	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Protein kinase domain-containing protein.	0.933
ENSLCAP00010031904	pink1-2	ENSLCAP00010031904	ENSLCAP00010052377	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Serine/threonine-protein kinase PINK1, mitochondrial-like.	0.933
LOC108874357	ENSLCAP00010020326	ENSLCAP00010048920	ENSLCAP00010020326	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Uncharacterized protein.	0.816
LOC108874357	Sqstm1	ENSLCAP00010048920	ENSLCAP00010000923	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Sequestosome 1.	0.892
LOC108874357	pink1	ENSLCAP00010048920	ENSLCAP00010035987	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Protein kinase domain-containing protein.	0.993
LOC108874357	pink1-2	ENSLCAP00010048920	ENSLCAP00010052377	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Serine/threonine-protein kinase PINK1, mitochondrial-like.	0.933
Sqstm1	Atg4b	ENSLCAP00010000923	ENSLCAP00010022767	Sequestosome 1.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.448
Sqstm1	ENSLCAP00010031904	ENSLCAP00010000923	ENSLCAP00010031904	Sequestosome 1.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.892
Sqstm1	LOC108874357	ENSLCAP00010000923	ENSLCAP00010048920	Sequestosome 1.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.892