27 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bysl	Uncharacterized protein. (436 aa)
	ngdn	Uncharacterized protein. (319 aa)
	dhx37	Uncharacterized protein. (1160 aa)
	ENSLCAP00010007568	Uncharacterized protein. (184 aa)
	nol10	NUC153 domain-containing protein. (757 aa)
	rpp40	Uncharacterized protein. (354 aa)
	nop9	Uncharacterized protein. (616 aa)
	ercc2	Helicase ATP-binding domain-containing protein. (774 aa)
	Wdr46	WD repeat domain 46. (572 aa)
	LOC108873066	Uncharacterized protein. (926 aa)
	rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
	tbl3	WD_REPEATS_REGION domain-containing protein. (942 aa)
	dcaf13	WD_REPEATS_REGION domain-containing protein. (445 aa)
	ENSLCAP00010036493	Uncharacterized protein. (160 aa)
	abt1	Uncharacterized protein. (267 aa)
	tsr2	Uncharacterized protein. (175 aa)
	utp23	Uncharacterized protein. (254 aa)
	utp4	WD_REPEATS_REGION domain-containing protein. (685 aa)
	kri1	Kri1_C domain-containing protein. (771 aa)
	ENSLCAP00010047246	WD repeat domain 43. (597 aa)
	utp25	INTEIN_C_TER domain-containing protein. (765 aa)
	ENSLCAP00010050308	BMS1 ribosome biogenesis factor. (1235 aa)
	ENSLCAP00010051751	UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae). (378 aa)
	Utp6	Uncharacterized protein. (95 aa)
	mrps11	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (198 aa)
	Tsr1	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae). (841 aa)
	ENSLCAP00010058439	WD_REPEATS_REGION domain-containing protein. (417 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010007568	Tsr1	ENSLCAP00010007568	ENSLCAP00010058405	Uncharacterized protein.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.596
ENSLCAP00010007568	bysl	ENSLCAP00010007568	ENSLCAP00010038800	Uncharacterized protein.	Uncharacterized protein.	0.775
ENSLCAP00010036493	Tsr1	ENSLCAP00010036493	ENSLCAP00010058405	Uncharacterized protein.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.596
ENSLCAP00010036493	bysl	ENSLCAP00010036493	ENSLCAP00010038800	Uncharacterized protein.	Uncharacterized protein.	0.775
ENSLCAP00010047246	ENSLCAP00010050308	ENSLCAP00010047246	ENSLCAP00010050308	WD repeat domain 43.	BMS1 ribosome biogenesis factor.	0.999
ENSLCAP00010047246	ENSLCAP00010051751	ENSLCAP00010047246	ENSLCAP00010051751	WD repeat domain 43.	UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae).	0.996
ENSLCAP00010047246	ENSLCAP00010058439	ENSLCAP00010047246	ENSLCAP00010058439	WD repeat domain 43.	WD_REPEATS_REGION domain-containing protein.	0.987
ENSLCAP00010047246	LOC108873066	ENSLCAP00010047246	ENSLCAP00010022280	WD repeat domain 43.	Uncharacterized protein.	0.999
ENSLCAP00010047246	Tsr1	ENSLCAP00010047246	ENSLCAP00010058405	WD repeat domain 43.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.923
ENSLCAP00010047246	Utp6	ENSLCAP00010047246	ENSLCAP00010054002	WD repeat domain 43.	Uncharacterized protein.	0.999
ENSLCAP00010047246	Wdr46	ENSLCAP00010047246	ENSLCAP00010021017	WD repeat domain 43.	WD repeat domain 46.	0.987
ENSLCAP00010047246	bysl	ENSLCAP00010047246	ENSLCAP00010038800	WD repeat domain 43.	Uncharacterized protein.	0.998
ENSLCAP00010047246	dcaf13	ENSLCAP00010047246	ENSLCAP00010032449	WD repeat domain 43.	WD_REPEATS_REGION domain-containing protein.	0.998
ENSLCAP00010047246	dhx37	ENSLCAP00010047246	ENSLCAP00010006340	WD repeat domain 43.	Uncharacterized protein.	0.865
ENSLCAP00010047246	kri1	ENSLCAP00010047246	ENSLCAP00010045037	WD repeat domain 43.	Kri1_C domain-containing protein.	0.667
ENSLCAP00010047246	mrps11	ENSLCAP00010047246	ENSLCAP00010058109	WD repeat domain 43.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.910
ENSLCAP00010047246	ngdn	ENSLCAP00010047246	ENSLCAP00010006077	WD repeat domain 43.	Uncharacterized protein.	0.998
ENSLCAP00010047246	nol10	ENSLCAP00010047246	ENSLCAP00010010755	WD repeat domain 43.	NUC153 domain-containing protein.	0.987
ENSLCAP00010047246	nop9	ENSLCAP00010047246	ENSLCAP00010015795	WD repeat domain 43.	Uncharacterized protein.	0.674
ENSLCAP00010047246	rrs1	ENSLCAP00010047246	ENSLCAP00010027775	WD repeat domain 43.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.874