25 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010025268	Guanine nucleotide binding protein-like 3 (nucleolar). (493 aa)
	ERI2	Exonuclease domain-containing protein. (617 aa)
	rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
	tbl3	WD_REPEATS_REGION domain-containing protein. (942 aa)
	ENSLCAP00010030192	Uncharacterized protein. (280 aa)
	Exosc7	Exosome component 7. (282 aa)
	abt1	Uncharacterized protein. (267 aa)
	utp23	Uncharacterized protein. (254 aa)
	kri1	Kri1_C domain-containing protein. (771 aa)
	ENSLCAP00010050308	BMS1 ribosome biogenesis factor. (1235 aa)
	exosc8	Uncharacterized protein. (292 aa)
	nol9	CLP1_P domain-containing protein. (701 aa)
	eri1	Uncharacterized protein. (356 aa)
	Tsr1	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae). (841 aa)
	EXOSC3	KH_dom_type_1 domain-containing protein. (285 aa)
	ENSLCAP00010009211	Exosome component 10. (825 aa)
	rcl1	Uncharacterized protein. (372 aa)
	nhp2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (159 aa)
	exosc2	Uncharacterized protein. (292 aa)
	rpp40	Uncharacterized protein. (354 aa)
	ENSLCAP00010013755	Ribosomal RNA processing 36. (267 aa)
	nop9	Uncharacterized protein. (616 aa)
	Nob1	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (497 aa)
	ENSLCAP00010021743	annotation not available (217 aa)
	exosc9	Uncharacterized protein. (432 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010009211	ENSLCAP00010013755	ENSLCAP00010009211	ENSLCAP00010013755	Exosome component 10.	Ribosomal RNA processing 36.	0.624
ENSLCAP00010009211	ENSLCAP00010021743	ENSLCAP00010009211	ENSLCAP00010021743	Exosome component 10.	annotation not available	0.983
ENSLCAP00010009211	ENSLCAP00010025268	ENSLCAP00010009211	ENSLCAP00010025268	Exosome component 10.	Guanine nucleotide binding protein-like 3 (nucleolar).	0.814
ENSLCAP00010009211	ENSLCAP00010030192	ENSLCAP00010009211	ENSLCAP00010030192	Exosome component 10.	Uncharacterized protein.	0.624
ENSLCAP00010009211	ENSLCAP00010050308	ENSLCAP00010009211	ENSLCAP00010050308	Exosome component 10.	BMS1 ribosome biogenesis factor.	0.987
ENSLCAP00010009211	EXOSC3	ENSLCAP00010009211	ENSLCAP00010000248	Exosome component 10.	KH_dom_type_1 domain-containing protein.	0.983
ENSLCAP00010009211	Exosc7	ENSLCAP00010009211	ENSLCAP00010032991	Exosome component 10.	Exosome component 7.	0.998
ENSLCAP00010009211	Nob1	ENSLCAP00010009211	ENSLCAP00010015937	Exosome component 10.	RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.	0.772
ENSLCAP00010009211	eri1	ENSLCAP00010009211	ENSLCAP00010057597	Exosome component 10.	Uncharacterized protein.	0.533
ENSLCAP00010009211	exosc2	ENSLCAP00010009211	ENSLCAP00010012406	Exosome component 10.	Uncharacterized protein.	0.998
ENSLCAP00010009211	exosc8	ENSLCAP00010009211	ENSLCAP00010053018	Exosome component 10.	Uncharacterized protein.	0.998
ENSLCAP00010009211	exosc9	ENSLCAP00010009211	ENSLCAP00010023581	Exosome component 10.	Uncharacterized protein.	0.998
ENSLCAP00010009211	kri1	ENSLCAP00010009211	ENSLCAP00010045037	Exosome component 10.	Kri1_C domain-containing protein.	0.462
ENSLCAP00010009211	nhp2	ENSLCAP00010009211	ENSLCAP00010010346	Exosome component 10.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.775
ENSLCAP00010009211	nol9	ENSLCAP00010009211	ENSLCAP00010054813	Exosome component 10.	CLP1_P domain-containing protein.	0.483
ENSLCAP00010009211	rcl1	ENSLCAP00010009211	ENSLCAP00010009492	Exosome component 10.	Uncharacterized protein.	0.975
ENSLCAP00010009211	rrs1	ENSLCAP00010009211	ENSLCAP00010027775	Exosome component 10.	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.	0.826
ENSLCAP00010009211	tbl3	ENSLCAP00010009211	ENSLCAP00010029073	Exosome component 10.	WD_REPEATS_REGION domain-containing protein.	0.979
ENSLCAP00010009211	utp23	ENSLCAP00010009211	ENSLCAP00010040359	Exosome component 10.	Uncharacterized protein.	0.401
ENSLCAP00010013755	ENSLCAP00010009211	ENSLCAP00010013755	ENSLCAP00010009211	Ribosomal RNA processing 36.	Exosome component 10.	0.624