49 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010003803	Polycystic kidney disease 2. (903 aa)
	ENSLCAP00010003979	Basic leucine zipper transcription factor, ATF-like. (125 aa)
	ENSLCAP00010005497	Zinc finger and AT hook domain containing. (923 aa)
	fstl3	Uncharacterized protein. (295 aa)
	cunh12orf29	Uncharacterized protein. (330 aa)
	mib1	Uncharacterized protein. (1035 aa)
	pdgfrb	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1105 aa)
	LOC108883024	WD_REPEATS_REGION domain-containing protein. (780 aa)
	SRF	MADS-box domain-containing protein. (601 aa)
	sh2b3	SH2 domain-containing protein. (752 aa)
	Cebpd	CCAAT/enhancer-binding protein. (290 aa)
	kdr	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1351 aa)
	ENSLCAP00010014383	SET domain containing 1B, a. (1548 aa)
	Ptprc	Protein tyrosine phosphatase, receptor type, C. (856 aa)
	ENSLCAP00010015247	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes. (417 aa)
	LOC108876160	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	ENSLCAP00010016269	TNFR-Cys domain-containing protein. (229 aa)
	ENSLCAP00010016675	SBDS, ribosome maturation factor. (265 aa)
	ercc2	Helicase ATP-binding domain-containing protein. (774 aa)
	Fsd1	Fibronectin type III and SPRY domain containing 1. (496 aa)
	ENSLCAP00010021440	Mix paired-like homeobox. (314 aa)
	Flt4	Fms-related tyrosine kinase 4; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1370 aa)
	ENSLCAP00010024280	MADS-box domain-containing protein. (495 aa)
	plek	Uncharacterized protein. (351 aa)
	Ufl1	UFM1-specific ligase 1. (771 aa)
	flt1	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1277 aa)
	ENSLCAP00010027430	Uncharacterized protein. (1508 aa)
	rrs1	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
	agpat5	PlsC domain-containing protein. (365 aa)
	mlf1	Uncharacterized protein. (262 aa)
	lig4	DNA ligase. (918 aa)
	g6pc3	Glucose-6-phosphatase; Belongs to the glucose-6-phosphatase family. (339 aa)
	ENSLCAP00010031917	T-cell acute lymphocytic leukemia 1. (376 aa)
	LOC108893952	MFS domain-containing protein. (450 aa)
	SP3	Uncharacterized protein. (703 aa)
	ARMC6	Uncharacterized protein. (468 aa)
	ENSLCAP00010034924	Sp3b transcription factor. (646 aa)
	LOC108875238	Uncharacterized protein. (2519 aa)
	GATA2	GATA binding protein 2. (458 aa)
	ENSLCAP00010040769	WD repeat domain 78. (700 aa)
	LOC108872510	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily. (1314 aa)
	LOC108885640	Uncharacterized protein. (458 aa)
	ENSLCAP00010049876	Protein kinase domain-containing protein. (193 aa)
	ENSLCAP00010051016	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (666 aa)
	adar	Uncharacterized protein. (1390 aa)
	slc37a4	MFS domain-containing protein. (429 aa)
	ENSLCAP00010056253	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b. (1429 aa)
	fev	ETS domain-containing protein. (220 aa)
	meox1	Homeobox domain-containing protein. (266 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010003803	mlf1	ENSLCAP00010003803	ENSLCAP00010031417	Polycystic kidney disease 2.	Uncharacterized protein.	0.422
ENSLCAP00010015247	LOC108875238	ENSLCAP00010015247	ENSLCAP00010036565	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	Uncharacterized protein.	0.422
ENSLCAP00010031917	GATA2	ENSLCAP00010031917	ENSLCAP00010038933	T-cell acute lymphocytic leukemia 1.	GATA binding protein 2.	0.764
ENSLCAP00010031917	LOC108885640	ENSLCAP00010031917	ENSLCAP00010048227	T-cell acute lymphocytic leukemia 1.	Uncharacterized protein.	0.764
ENSLCAP00010049876	pdgfrb	ENSLCAP00010049876	ENSLCAP00010007109	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.658
ENSLCAP00010051016	ercc2	ENSLCAP00010051016	ENSLCAP00010019831	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	Helicase ATP-binding domain-containing protein.	0.596
ENSLCAP00010051016	lig4	ENSLCAP00010051016	ENSLCAP00010031670	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	DNA ligase.	0.984
Flt4	pdgfrb	ENSLCAP00010023763	ENSLCAP00010007109	Fms-related tyrosine kinase 4; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.658
Fsd1	fstl3	ENSLCAP00010020130	ENSLCAP00010006070	Fibronectin type III and SPRY domain containing 1.	Uncharacterized protein.	0.610
GATA2	ENSLCAP00010031917	ENSLCAP00010038933	ENSLCAP00010031917	GATA binding protein 2.	T-cell acute lymphocytic leukemia 1.	0.764
GATA2	fstl3	ENSLCAP00010038933	ENSLCAP00010006070	GATA binding protein 2.	Uncharacterized protein.	0.471
LOC108872510	pdgfrb	ENSLCAP00010042366	ENSLCAP00010007109	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.658
LOC108875238	ENSLCAP00010015247	ENSLCAP00010036565	ENSLCAP00010015247	Uncharacterized protein.	Transcriptional regulator; Transcription factor that binds DNA in a non-specific manner, yet also specifically recognizes the core sequence 5'-CAC[GA]TG-3'. Activates the transcription of growth-related genes.	0.422
LOC108876160	pdgfrb	ENSLCAP00010015620	ENSLCAP00010007109	Transforming growth factor beta; Belongs to the TGF-beta family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.526
LOC108876160	plek	ENSLCAP00010015620	ENSLCAP00010024405	Transforming growth factor beta; Belongs to the TGF-beta family.	Uncharacterized protein.	0.474
LOC108885640	ENSLCAP00010031917	ENSLCAP00010048227	ENSLCAP00010031917	Uncharacterized protein.	T-cell acute lymphocytic leukemia 1.	0.764
Ptprc	pdgfrb	ENSLCAP00010014891	ENSLCAP00010007109	Protein tyrosine phosphatase, receptor type, C.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.454
Ptprc	plek	ENSLCAP00010014891	ENSLCAP00010024405	Protein tyrosine phosphatase, receptor type, C.	Uncharacterized protein.	0.434
ercc2	ENSLCAP00010051016	ENSLCAP00010019831	ENSLCAP00010051016	Helicase ATP-binding domain-containing protein.	X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family.	0.596
ercc2	lig4	ENSLCAP00010019831	ENSLCAP00010031670	Helicase ATP-binding domain-containing protein.	DNA ligase.	0.624