120 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	INHBC	Inhibin subunit beta C. (368 aa)
	LOC108890171	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (116 aa)
	Copa	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1240 aa)
	hamp	Latescidin 1. (89 aa)
	ENSLCAP00010004510	Luteinizing hormone, beta polypeptide. (185 aa)
	LOC108879622	CRF domain-containing protein. (162 aa)
	ENSLCAP00010005369	TGF_BETA_2 domain-containing protein. (379 aa)
	CALCB	CALCITONIN domain-containing protein. (136 aa)
	LOC108873190	Uncharacterized protein. (219 aa)
	ENSLCAP00010007105	Uncharacterized protein. (102 aa)
	LOC108884930	CRF domain-containing protein. (140 aa)
	ENSLCAP00010010539	Endothelin 2. (170 aa)
	LOC108889772	Uncharacterized protein. (118 aa)
	LOC108873578	Cys_knot domain-containing protein. (158 aa)
	ADCYAP1	GLUCAGON domain-containing protein. (239 aa)
	LOC108882355	Uncharacterized protein; Belongs to the vasopressin/oxytocin family. (187 aa)
	rln3	IlGF domain-containing protein. (151 aa)
	ubox5	Uncharacterized protein. (648 aa)
	oxt	Uncharacterized protein; Belongs to the vasopressin/oxytocin family. (156 aa)
	ENSLCAP00010011972	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (62 aa)
	inhba	TGF_BETA_2 domain-containing protein. (400 aa)
	LOC108894208	Agouti domain-containing protein. (142 aa)
	ENSLCAP00010014288	Uncharacterized protein. (853 aa)
	LOC108873226	Pro-opiomelanocortin-like. (219 aa)
	LOC108880355	Uncharacterized protein. (130 aa)
	LOC108880354	Uncharacterized protein. (137 aa)
	nppa	Uncharacterized protein. (144 aa)
	stc2	Uncharacterized protein. (286 aa)
	ENSLCAP00010015669	Phosphoinositide phospholipase C. (1127 aa)
	hcrt	Uncharacterized protein. (149 aa)
	Gphb5	Glycoprotein hormone beta 5. (137 aa)
	ENSLCAP00010016201	GALANIN domain-containing protein. (148 aa)
	Gnrh2	Gonadoliberin; Stimulates the secretion of gonadotropins. Belongs to the GnRH family. (94 aa)
	LOC108898852	Uncharacterized protein. (231 aa)
	LOC108885708	Uncharacterized protein. (218 aa)
	insl5	IlGF domain-containing protein. (109 aa)
	LOC108895658	Uncharacterized protein. (266 aa)
	ENSLCAP00010020044	GLUCAGON domain-containing protein. (140 aa)
	trh	Pro-thyrotropin-releasing hormone; Functions as a regulator of the biosynthesis of TSH in the anterior pituitary gland and as a neurotransmitter/ neuromodulator in the central and peripheral nervous systems. (270 aa)
	nppc	Uncharacterized protein. (121 aa)
	LOC108890171-2	Insulin. (116 aa)
	LOC108897331	Gonadoliberin; Stimulates the secretion of gonadotropins. Belongs to the GnRH family. (91 aa)
	LOC108875186	Uncharacterized protein. (168 aa)
	LOC108887349	Uncharacterized protein. (131 aa)
	SPX	Spexin hormone. (120 aa)
	ucn	CRF domain-containing protein. (146 aa)
	LOC108875503	Uncharacterized protein. (97 aa)
	ENSLCAP00010024215	Uncharacterized protein. (189 aa)
	LOC108873102	Fibronectin type-III domain-containing protein. (338 aa)
	LOC108875187	Uncharacterized protein. (161 aa)
	LOC108898003	Fibronectin type-III domain-containing protein. (224 aa)
	NPY	Uncharacterized protein. (100 aa)
	ENSLCAP00010026476	Urotensin 2, alpha. (129 aa)
	ENSLCAP00010026674	Calcitonin/calcitonin-related polypeptide, alpha. (180 aa)
	LOC108881775	C1q domain-containing protein. (339 aa)
	LOC108881787	CRF domain-containing protein. (171 aa)
	LOC108898503	Uncharacterized protein. (97 aa)
	LOC108879322	IlGF domain-containing protein. (148 aa)
	LOC108885451	Uncharacterized protein. (293 aa)
	ENSLCAP00010030983	Uncharacterized protein. (104 aa)
	IAPP	CALCITONIN domain-containing protein. (131 aa)
	LOC108892699	Uncharacterized protein. (131 aa)
	fndc4	Fibronectin type-III domain-containing protein. (220 aa)
	adm	Uncharacterized protein. (174 aa)
	epo	Erythropoietin; Erythropoietin is the principal hormone involved in the regulation of erythrocyte differentiation and the maintenance of a physiological level of circulating erythrocyte mass. Belongs to the EPO/TPO family. (185 aa)
	LOC108888322	Gastrin domain-containing protein. (204 aa)
	npy	Uncharacterized protein. (114 aa)
	ENSLCAP00010037250	Endothelin 1. (190 aa)
	LOC108887630	TGF_BETA_2 domain-containing protein. (400 aa)
	npff	Uncharacterized protein. (128 aa)
	pth	Uncharacterized protein. (109 aa)
	igf2	Insulin-like growth factor II. (215 aa)
	LOC108897500	Uncharacterized protein. (168 aa)
	ENSLCAP00010038756	Prolactin. (240 aa)
	ENSLCAP00010038771	Prolactin 2. (215 aa)
	LOC108893384	Insulin; Insulin decreases blood glucose concentration. It increases cell permeability to monosaccharides, amino acids and fatty acids. It accelerates glycolysis, the pentose phosphate cycle, and glycogen synthesis in liver. (115 aa)
	LOC108881433	Motilin_assoc domain-containing protein. (107 aa)
	ttr	Transthyretin; Thyroid hormone-binding protein. Probably transports thyroxine from the bloodstream to the brain. (149 aa)
	LOC108888778	Cys_knot domain-containing protein. (129 aa)
	gpha2	Glycoprotein hormones alpha chain; Belongs to the glycoprotein hormones subunit alpha family. (136 aa)
	ENSLCAP00010040003	Cys_knot domain-containing protein. (129 aa)
	LOC108887820	Cys_knot domain-containing protein. (145 aa)
	ENSLCAP00010042286	Uncharacterized protein. (125 aa)
	ENSLCAP00010042296	Spexin hormone. (120 aa)
	LOC108874412	Somatostatin domain-containing protein. (126 aa)
	LOC108874411	Somatostatin domain-containing protein. (122 aa)
	vip	GLUCAGON domain-containing protein. (175 aa)
	LOC108873234	Somatotropin; Growth hormone plays an important role in growth control and is involved in the regulation of several anabolic processes. Implicated as an osmoregulatory substance important for seawater adaptation; Belongs to the somatotropin/prolactin family. (217 aa)
	ENSLCAP00010043543	Inhibin subunit beta Aa. (398 aa)
	LOC108883274	GLUCAGON domain-containing protein. (192 aa)
	LOC108882411	Uncharacterized protein. (204 aa)
	inha	Inhibin alpha chain; Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. Inhibins/activins are involved in regulating a number of diverse functions such as hypothalamic and pituitary hormone secretion, gonadal hormone secretion, germ cell development and maturation, erythroid differentiation, insulin secretion, nerve cell survival, embryonic axial development or bone growth, depending on their subunit composition; Belongs to the TGF-beta family. (349 aa)
	cga	Glycoprotein hormones alpha chain; Belongs to the glycoprotein hormones subunit alpha family. (132 aa)
	LOC108888525	Uncharacterized protein. (164 aa)
	Gnrh1	Uncharacterized protein. (99 aa)
	ENSLCAP00010047353	Prolactin releasing hormone 2. (113 aa)
	LOC108885633	CRF domain-containing protein. (123 aa)
	LOC108874413	Uncharacterized protein. (137 aa)
	LOC108883252	IlGF domain-containing protein. (131 aa)
	ecrg4	Uncharacterized protein. (145 aa)
	ENSLCAP00010050680	Fibronectin type III domain containing 5b. (201 aa)
	LOC108888483	Uncharacterized protein. (225 aa)
	POMC	Uncharacterized protein. (218 aa)
	ENSLCAP00010052790	IlGF domain-containing protein. (131 aa)
	cck	Gastrin domain-containing protein. (137 aa)
	ENSLCAP00010053347	Uncharacterized protein. (79 aa)
	LOC108874739	GALANIN domain-containing protein. (142 aa)
	Apln	Uncharacterized protein. (82 aa)
	Fam132a	C1q and TNF related 12. (314 aa)
	gcg	Uncharacterized protein. (123 aa)
	nts	Uncharacterized protein. (155 aa)
	metrnl	Uncharacterized protein. (286 aa)
	LOC108880855	Uncharacterized protein. (178 aa)
	metrn	Uncharacterized protein. (304 aa)
	nppa-2	Uncharacterized protein. (156 aa)
	LOC108880354-2	Uncharacterized protein. (136 aa)
	ENSLCAP00010057780	Zgc:195023. (132 aa)
	ENSLCAP00010058021	Pro-melanin-concentrating hormone. (146 aa)
	Igf1	Insulin-like growth factor 1. (186 aa)
	LOC108878785	Uncharacterized protein. (278 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADCYAP1	LOC108874411	ENSLCAP00010011490	ENSLCAP00010042428	GLUCAGON domain-containing protein.	Somatostatin domain-containing protein.	0.423
ADCYAP1	LOC108883274	ENSLCAP00010011490	ENSLCAP00010044443	GLUCAGON domain-containing protein.	GLUCAGON domain-containing protein.	0.902
ADCYAP1	npy	ENSLCAP00010011490	ENSLCAP00010036514	GLUCAGON domain-containing protein.	Uncharacterized protein.	0.413
Apln	ENSLCAP00010016201	ENSLCAP00010054608	ENSLCAP00010016201	Uncharacterized protein.	GALANIN domain-containing protein.	0.630
Apln	ENSLCAP00010058021	ENSLCAP00010054608	ENSLCAP00010058021	Uncharacterized protein.	Pro-melanin-concentrating hormone.	0.516
Apln	LOC108873190	ENSLCAP00010054608	ENSLCAP00010006983	Uncharacterized protein.	Uncharacterized protein.	0.599
Apln	LOC108873226	ENSLCAP00010054608	ENSLCAP00010014473	Uncharacterized protein.	Pro-opiomelanocortin-like.	0.599
Apln	LOC108874411	ENSLCAP00010054608	ENSLCAP00010042428	Uncharacterized protein.	Somatostatin domain-containing protein.	0.649
Apln	LOC108874739	ENSLCAP00010054608	ENSLCAP00010053815	Uncharacterized protein.	GALANIN domain-containing protein.	0.630
Apln	LOC108875503	ENSLCAP00010054608	ENSLCAP00010023657	Uncharacterized protein.	Uncharacterized protein.	0.641
Apln	LOC108881433	ENSLCAP00010054608	ENSLCAP00010038847	Uncharacterized protein.	Motilin_assoc domain-containing protein.	0.430
Apln	LOC108885708	ENSLCAP00010054608	ENSLCAP00010017298	Uncharacterized protein.	Uncharacterized protein.	0.599
Apln	LOC108894208	ENSLCAP00010054608	ENSLCAP00010014186	Uncharacterized protein.	Agouti domain-containing protein.	0.433
Apln	LOC108895658	ENSLCAP00010054608	ENSLCAP00010019857	Uncharacterized protein.	Uncharacterized protein.	0.754
Apln	LOC108898503	ENSLCAP00010054608	ENSLCAP00010029748	Uncharacterized protein.	Uncharacterized protein.	0.656
Apln	NPY	ENSLCAP00010054608	ENSLCAP00010025673	Uncharacterized protein.	Uncharacterized protein.	0.598
Apln	POMC	ENSLCAP00010054608	ENSLCAP00010052350	Uncharacterized protein.	Uncharacterized protein.	0.599
Apln	npy	ENSLCAP00010054608	ENSLCAP00010036514	Uncharacterized protein.	Uncharacterized protein.	0.598
Apln	nts	ENSLCAP00010054608	ENSLCAP00010056355	Uncharacterized protein.	Uncharacterized protein.	0.418
CALCB	ENSLCAP00010020044	ENSLCAP00010005698	ENSLCAP00010020044	CALCITONIN domain-containing protein.	GLUCAGON domain-containing protein.	0.449