STRINGSTRING
opn3 opn3 RHO RHO LOC108898055 LOC108898055 ENSLCAP00010022999 ENSLCAP00010022999 ENSLCAP00010026789 ENSLCAP00010026789 ENSLCAP00010035876 ENSLCAP00010035876 LOC108889502 LOC108889502
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
opn3G_PROTEIN_RECEP_F1_2 domain-containing protein. (400 aa)
RHORhodopsin. (354 aa)
LOC108898055G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (336 aa)
ENSLCAP00010022999Opsin 8, group member b. (220 aa)
ENSLCAP00010026789Opsin 5; Belongs to the G-protein coupled receptor 1 family. (332 aa)
ENSLCAP00010035876Opsin 5; Belongs to the G-protein coupled receptor 1 family. (330 aa)
LOC108889502Rhodopsin. (353 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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