23 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rpp38	Ribonuclease P/MRP 38 subunit. (275 aa)
	Fbl	Fibrillarin. (266 aa)
	snu13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
	nhp2	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (159 aa)
	nop10	Uncharacterized protein. (64 aa)
	ENSLCAP00010017293	Alba domain-containing protein. (181 aa)
	pop4	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (223 aa)
	rrp9	WD_REPEATS_REGION domain-containing protein. (503 aa)
	ENSLCAP00010027241	Ribonuclease P/MRP 25 subunit-like. (191 aa)
	Naf1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (347 aa)
	Nolc1	LisH domain-containing protein. (342 aa)
	pop7	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (151 aa)
	Rpp30	Ribonuclease P/MRP 30 subunit. (197 aa)
	dkc1	PUA domain-containing protein. (507 aa)
	Gar1	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (222 aa)
	pop5	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (167 aa)
	rpp40	Uncharacterized protein. (354 aa)
	POP1	POP1 homolog, ribonuclease P/MRP subunit. (976 aa)
	lsm6	Sm domain-containing protein. (86 aa)
	mphosph10	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (689 aa)
	ENSLCAP00010015403	NOP56 ribonucleoprotein homolog. (564 aa)
	ENSLCAP00010038732	Ribonuclease P and MRP subunit p25, b. (189 aa)
	ENSLCAP00010038117	NOP58 ribonucleoprotein homolog (yeast). (566 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010015403	ENSLCAP00010038117	ENSLCAP00010015403	ENSLCAP00010038117	NOP56 ribonucleoprotein homolog.	NOP58 ribonucleoprotein homolog (yeast).	0.999
ENSLCAP00010015403	Fbl	ENSLCAP00010015403	ENSLCAP00010011620	NOP56 ribonucleoprotein homolog.	Fibrillarin.	0.999
ENSLCAP00010015403	Gar1	ENSLCAP00010015403	ENSLCAP00010047064	NOP56 ribonucleoprotein homolog.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.959
ENSLCAP00010015403	Naf1	ENSLCAP00010015403	ENSLCAP00010032588	NOP56 ribonucleoprotein homolog.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.460
ENSLCAP00010015403	Nolc1	ENSLCAP00010015403	ENSLCAP00010034038	NOP56 ribonucleoprotein homolog.	LisH domain-containing protein.	0.987
ENSLCAP00010015403	Rpp38	ENSLCAP00010015403	ENSLCAP00010010530	NOP56 ribonucleoprotein homolog.	Ribonuclease P/MRP 38 subunit.	0.997
ENSLCAP00010015403	dkc1	ENSLCAP00010015403	ENSLCAP00010048242	NOP56 ribonucleoprotein homolog.	PUA domain-containing protein.	0.998
ENSLCAP00010015403	mphosph10	ENSLCAP00010015403	ENSLCAP00010041662	NOP56 ribonucleoprotein homolog.	U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family.	0.997
ENSLCAP00010015403	nhp2	ENSLCAP00010015403	ENSLCAP00010010346	NOP56 ribonucleoprotein homolog.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.995
ENSLCAP00010015403	nop10	ENSLCAP00010015403	ENSLCAP00010009936	NOP56 ribonucleoprotein homolog.	Uncharacterized protein.	0.796
ENSLCAP00010015403	rrp9	ENSLCAP00010015403	ENSLCAP00010020095	NOP56 ribonucleoprotein homolog.	WD_REPEATS_REGION domain-containing protein.	0.999
ENSLCAP00010015403	snu13	ENSLCAP00010015403	ENSLCAP00010015169	NOP56 ribonucleoprotein homolog.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.999
ENSLCAP00010017293	POP1	ENSLCAP00010017293	ENSLCAP00010044571	Alba domain-containing protein.	POP1 homolog, ribonuclease P/MRP subunit.	0.975
ENSLCAP00010017293	Rpp30	ENSLCAP00010017293	ENSLCAP00010036611	Alba domain-containing protein.	Ribonuclease P/MRP 30 subunit.	0.988
ENSLCAP00010017293	Rpp38	ENSLCAP00010017293	ENSLCAP00010010530	Alba domain-containing protein.	Ribonuclease P/MRP 38 subunit.	0.971
ENSLCAP00010017293	nhp2	ENSLCAP00010017293	ENSLCAP00010010346	Alba domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.467
ENSLCAP00010017293	pop4	ENSLCAP00010017293	ENSLCAP00010017792	Alba domain-containing protein.	Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.982
ENSLCAP00010017293	pop5	ENSLCAP00010017293	ENSLCAP00010044801	Alba domain-containing protein.	Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends.	0.984
ENSLCAP00010017293	pop7	ENSLCAP00010017293	ENSLCAP00010035046	Alba domain-containing protein.	Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences.	0.945
ENSLCAP00010017293	rpp40	ENSLCAP00010017293	ENSLCAP00010013326	Alba domain-containing protein.	Uncharacterized protein.	0.925