87 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010029379	Tectonin beta-propeller repeat containing 1b. (1112 aa)
	ENSLCAP00010000206	RUN domain-containing protein. (92 aa)
	LOC108883288	Uncharacterized protein. (1480 aa)
	Sqstm1	Sequestosome 1. (341 aa)
	atp13a2	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1161 aa)
	wdr81	Uncharacterized protein. (2123 aa)
	snap29	Uncharacterized protein. (259 aa)
	ENSLCAP00010003683	Rab-GAP TBC domain-containing protein. (956 aa)
	vti1a	t-SNARE coiled-coil homology domain-containing protein. (224 aa)
	Map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (112 aa)
	atg16l1	WD_REPEATS_REGION domain-containing protein. (644 aa)
	ENSLCAP00010006385	Beclin 1, autophagy related. (432 aa)
	ENSLCAP00010006641	DUF4206 domain-containing protein. (346 aa)
	srpx	Uncharacterized protein. (461 aa)
	LOC108884097	Uncharacterized protein. (121 aa)
	LOC108890200	Rab-GAP TBC domain-containing protein. (412 aa)
	GABARAPL2	GABA type A receptor associated protein like 2. (135 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108883363	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (810 aa)
	rb1cc1	ATG11 domain-containing protein. (1651 aa)
	ENSLCAP00010011651	Pleckstrin homology domain containing, family M (with RUN domain) member 1. (790 aa)
	stx17	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	ENSLCAP00010012156	Tectonin beta-propeller repeat containing 1a. (426 aa)
	ENSLCAP00010015822	Uncharacterized protein. (542 aa)
	ENSLCAP00010015830	DUF4206 domain-containing protein. (234 aa)
	gabarap	Uncharacterized protein. (122 aa)
	ENSLCAP00010016977	Uncharacterized protein. (395 aa)
	LOC108884012	WD_REPEATS_REGION domain-containing protein. (612 aa)
	ENSLCAP00010018801	WD_REPEATS_REGION domain-containing protein. (394 aa)
	LOC108889987	Uncharacterized protein. (308 aa)
	ENSLCAP00010019157	Neighbor of brca1 gene 1b. (1011 aa)
	Tmem150b	Zgc:123244. (182 aa)
	tp53inp1	Uncharacterized protein. (294 aa)
	LOC108879184	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (609 aa)
	ENSLCAP00010020326	Uncharacterized protein. (123 aa)
	Pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (879 aa)
	lamp1	Uncharacterized protein. (417 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	LOC108887330	Uncharacterized protein. (117 aa)
	PIP4K2B	Phosphatidylinositol-5-phosphate 4-kinase type 2 beta. (418 aa)
	atp6ap2	Uncharacterized protein. (362 aa)
	TBC1D14	Rab-GAP TBC domain-containing protein. (348 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (926 aa)
	Atg4b	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (398 aa)
	ENSLCAP00010024687	N_BRCA1_IG domain-containing protein. (606 aa)
	map1lc3c	Uncharacterized protein. (128 aa)
	ENSLCAP00010024813	FYVE and coiled-coil domain containing 1a. (1485 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	WIPI1	WD repeat domain, phosphoinositide interacting 1. (405 aa)
	rab24	Uncharacterized protein. (204 aa)
	LOC108890662	Uncharacterized protein. (692 aa)
	calcoco2	SKICH domain-containing protein. (600 aa)
	ENSLCAP00010031439	Microtubule-associated protein 1 light chain 3 beta. (135 aa)
	ENSLCAP00010032246	Battenin. (378 aa)
	ENSLCAP00010033442	TBC1 domain family, member 25. (684 aa)
	ENSLCAP00010034154	UV radiation resistance associated gene. (669 aa)
	ENSLCAP00010035056	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (888 aa)
	ENSLCAP00010036105	TBC1 domain family, member 5. (834 aa)
	Wdfy3	WD repeat and FYVE domain containing 3. (3531 aa)
	ENSLCAP00010038893	GABA(A) receptor-associated protein like 2. (157 aa)
	RAB7A	Uncharacterized protein. (207 aa)
	ZFYVE1	Uncharacterized protein. (786 aa)
	ENSLCAP00010041949	Zinc finger, FYVE domain containing 1. (786 aa)
	LOC108872487	Uncharacterized protein. (136 aa)
	optn	CCHC NOA-type domain-containing protein. (526 aa)
	LOC108877935	Uncharacterized protein. (182 aa)
	ENSLCAP00010046611	RUN and cysteine rich domain containing beclin 1 interacting protein like. (322 aa)
	LOC108889848	Uncharacterized protein. (339 aa)
	c9orf72	Uncharacterized protein. (462 aa)
	LOC108885638	Uncharacterized protein. (285 aa)
	LOC108874432	WD_REPEATS_REGION domain-containing protein. (612 aa)
	SRPX	Sushi repeat containing protein X-linked. (461 aa)
	pip4k2a	PIPK domain-containing protein. (443 aa)
	sting1	Uncharacterized protein. (409 aa)
	rab12	Uncharacterized protein. (242 aa)
	ENSLCAP00010053946	Lysosomal-associated membrane protein 2. (264 aa)
	ENSLCAP00010056498	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (546 aa)
	tmem230	Uncharacterized protein. (119 aa)
	Vps16	Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family. (818 aa)
	LOC108891486	Rab-GAP TBC domain-containing protein. (640 aa)
	vps33a	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (610 aa)
	Ulk3	Protein kinase domain-containing protein. (135 aa)
	atg14	Galectin domain-containing protein. (555 aa)
	rab23	Uncharacterized protein. (235 aa)
	ENSLCAP00010060032	Neighbor of brca1 gene 1a. (685 aa)
	JMY	WH2 domain-containing protein. (897 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg12	Atg4b	ENSLCAP00010021188	ENSLCAP00010022767	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.713
Atg12	ENSLCAP00010006385	ENSLCAP00010021188	ENSLCAP00010006385	Uncharacterized protein.	Beclin 1, autophagy related.	0.917
Atg12	ENSLCAP00010018801	ENSLCAP00010021188	ENSLCAP00010018801	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.935
Atg12	ENSLCAP00010019157	ENSLCAP00010021188	ENSLCAP00010019157	Uncharacterized protein.	Neighbor of brca1 gene 1b.	0.828
Atg12	ENSLCAP00010020326	ENSLCAP00010021188	ENSLCAP00010020326	Uncharacterized protein.	Uncharacterized protein.	0.801
Atg12	ENSLCAP00010024687	ENSLCAP00010021188	ENSLCAP00010024687	Uncharacterized protein.	N_BRCA1_IG domain-containing protein.	0.828
Atg12	ENSLCAP00010025602	ENSLCAP00010021188	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.988
Atg12	ENSLCAP00010029379	ENSLCAP00010021188	ENSLCAP00010029379	Uncharacterized protein.	Tectonin beta-propeller repeat containing 1b.	0.776
Atg12	ENSLCAP00010031439	ENSLCAP00010021188	ENSLCAP00010031439	Uncharacterized protein.	Microtubule-associated protein 1 light chain 3 beta.	0.853
Atg12	ENSLCAP00010034154	ENSLCAP00010021188	ENSLCAP00010034154	Uncharacterized protein.	UV radiation resistance associated gene.	0.665
Atg12	ENSLCAP00010035056	ENSLCAP00010021188	ENSLCAP00010035056	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.688
Atg12	ENSLCAP00010038893	ENSLCAP00010021188	ENSLCAP00010038893	Uncharacterized protein.	GABA(A) receptor-associated protein like 2.	0.984
Atg12	ENSLCAP00010053946	ENSLCAP00010021188	ENSLCAP00010053946	Uncharacterized protein.	Lysosomal-associated membrane protein 2.	0.408
Atg12	ENSLCAP00010060032	ENSLCAP00010021188	ENSLCAP00010060032	Uncharacterized protein.	Neighbor of brca1 gene 1a.	0.828
Atg12	GABARAPL2	ENSLCAP00010021188	ENSLCAP00010008982	Uncharacterized protein.	GABA type A receptor associated protein like 2.	0.984
Atg12	LOC108872487	ENSLCAP00010021188	ENSLCAP00010045695	Uncharacterized protein.	Uncharacterized protein.	0.764
Atg12	LOC108874432	ENSLCAP00010021188	ENSLCAP00010049301	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.993
Atg12	LOC108883363	ENSLCAP00010021188	ENSLCAP00010009423	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.688
Atg12	LOC108884012	ENSLCAP00010021188	ENSLCAP00010018712	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.993
Atg12	LOC108887330	ENSLCAP00010021188	ENSLCAP00010021592	Uncharacterized protein.	Uncharacterized protein.	0.975