4 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	Atg12	Uncharacterized protein. (127 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	atg7	Uncharacterized protein. (738 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg12	ENSLCAP00010025602	ENSLCAP00010021188	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.988
Atg12	LOC108891182	ENSLCAP00010021188	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.998
Atg12	atg7	ENSLCAP00010021188	ENSLCAP00010043910	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSLCAP00010025602	Atg12	ENSLCAP00010025602	ENSLCAP00010021188	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.988
ENSLCAP00010025602	atg7	ENSLCAP00010025602	ENSLCAP00010043910	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.872
LOC108891182	Atg12	ENSLCAP00010009358	ENSLCAP00010021188	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.998
LOC108891182	atg7	ENSLCAP00010009358	ENSLCAP00010043910	Autophagy protein 5; Involved in autophagic vesicle formation.	Uncharacterized protein.	0.986
atg7	Atg12	ENSLCAP00010043910	ENSLCAP00010021188	Uncharacterized protein.	Uncharacterized protein.	0.999
atg7	ENSLCAP00010025602	ENSLCAP00010043910	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.872
atg7	LOC108891182	ENSLCAP00010043910	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.986