96 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010047007	Uncharacterized protein. (1358 aa)
	ENSLCAP00010046611	RUN and cysteine rich domain containing beclin 1 interacting protein like. (322 aa)
	epg5	Uncharacterized protein. (2593 aa)
	ENSLCAP00010059397	Uncharacterized protein. (103 aa)
	LOC108878720	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	ENSLCAP00010059299	Proline-rich transmembrane protein 2. (148 aa)
	LOC108897642	C2 domain-containing protein. (504 aa)
	LOC108897703	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (208 aa)
	stx16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	stx6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (255 aa)
	LOC108877381	Uncharacterized protein; Belongs to the synaptobrevin family. (219 aa)
	rab13	Uncharacterized protein. (200 aa)
	LOC108879747	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (187 aa)
	Stx8	Syntaxin 8. (242 aa)
	LOC108878442	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (293 aa)
	LOC108887525	V-SNARE coiled-coil homology domain-containing protein. (134 aa)
	LOC108883745	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	STX19	t-SNARE coiled-coil homology domain-containing protein. (302 aa)
	ENSLCAP00010049655	Uncharacterized protein. (124 aa)
	vti1b	t-SNARE coiled-coil homology domain-containing protein. (227 aa)
	LOC108885638	Uncharacterized protein. (285 aa)
	ENSLCAP00010047272	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (282 aa)
	ENSLCAP00010047160	Syntaxin 1B; Belongs to the syntaxin family. (315 aa)
	ENSLCAP00010000206	RUN domain-containing protein. (92 aa)
	atp13a2	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1161 aa)
	vamp7	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	rab20	Uncharacterized protein. (253 aa)
	snap29	Uncharacterized protein. (259 aa)
	ENSLCAP00010004060	USO1 vesicle transport factor. (936 aa)
	vti1a	t-SNARE coiled-coil homology domain-containing protein. (224 aa)
	ENSLCAP00010005038	Uncharacterized protein. (156 aa)
	ENSLCAP00010006355	Syntaxin 2a. (223 aa)
	ENSLCAP00010006641	DUF4206 domain-containing protein. (346 aa)
	snap47	Uncharacterized protein. (423 aa)
	ENSLCAP00010009510	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (133 aa)
	snapin	Uncharacterized protein. (129 aa)
	snap25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (204 aa)
	ENSLCAP00010011651	Pleckstrin homology domain containing, family M (with RUN domain) member 1. (790 aa)
	stx17	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	ENSLCAP00010013719	Syntaxin 11b, tandem duplicate 2; Belongs to the syntaxin family. (280 aa)
	vps41	Vacuolar protein sorting-associated protein 41 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport pathways; Belongs to the VPS41 family. (853 aa)
	gosr2	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (212 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (216 aa)
	stx1a	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	stx12	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	ENSLCAP00010015822	Uncharacterized protein. (542 aa)
	ENSLCAP00010015830	DUF4206 domain-containing protein. (234 aa)
	LOC108889980	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
	LOC108895481	V-SNARE coiled-coil homology domain-containing protein. (103 aa)
	vamp4	V-SNARE coiled-coil homology domain-containing protein. (156 aa)
	ENSLCAP00010017778	Pyrin domain-containing protein. (1278 aa)
	ENSLCAP00010018088	Synaptotagmin VIIb. (493 aa)
	LOC108888999	Myb_DNA-bind_5 domain-containing protein. (486 aa)
	ENSLCAP00010019487	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (178 aa)
	LOC108892189	Uncharacterized protein. (226 aa)
	tgfbrap1	CNH domain-containing protein. (877 aa)
	Svip	Si:ch73-147o17.1. (110 aa)
	vps39	CNH domain-containing protein. (876 aa)
	ENSLCAP00010022499	Uncharacterized protein. (844 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (926 aa)
	LOC108878291	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (323 aa)
	ENSLCAP00010025253	Uncharacterized protein. (999 aa)
	VAMP3	V-SNARE coiled-coil homology domain-containing protein. (143 aa)
	gosr1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (248 aa)
	LOC108890368	Uncharacterized protein. (183 aa)
	ENSLCAP00010027920	Zmp:0000000735. (687 aa)
	syt11	Uncharacterized protein. (469 aa)
	ENSLCAP00010029243	SAM domain-containing protein. (853 aa)
	LOC108886858	Uncharacterized protein. (757 aa)
	stx4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (364 aa)
	ENSLCAP00010031592	Uncharacterized protein. (1221 aa)
	ENSLCAP00010032246	Battenin. (378 aa)
	stx10	t-SNARE coiled-coil homology domain-containing protein. (247 aa)
	ENSLCAP00010034154	UV radiation resistance associated gene. (669 aa)
	yipf4	Protein YIPF. (246 aa)
	ENSLCAP00010034982	Early endosome antigen 1. (1124 aa)
	ENSLCAP00010035780	SAM domain-containing protein. (1576 aa)
	ankfy1	Uncharacterized protein. (1166 aa)
	LOC108874962	CNH domain-containing protein. (837 aa)
	ENSLCAP00010036418	Transmembrane protein 175. (492 aa)
	Stxbp6	Syntaxin binding protein 6 (amisyn). (164 aa)
	syt4	Uncharacterized protein. (472 aa)
	RAB7A	Uncharacterized protein. (207 aa)
	bet1	t-SNARE coiled-coil homology domain-containing protein. (112 aa)
	LOC108885562	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (186 aa)
	bet1-2	BET1 homolog. (112 aa)
	tsnare1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (287 aa)
	stx7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (257 aa)
	ENSLCAP00010042231	t-SNARE coiled-coil homology domain-containing protein. (307 aa)
	ENSLCAP00010042238	Syntaxin 11a. (276 aa)
	yipf5	Protein YIPF. (257 aa)
	stx5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (333 aa)
	ENSLCAP00010044852	HMG box domain-containing protein. (243 aa)
	LOC108893497	V-SNARE coiled-coil homology domain-containing protein. (155 aa)
	GOSR1	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. (249 aa)
	ENSLCAP00010045964	Phosphoinositide kinase, FYVE finger containing. (2057 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010000206	ENSLCAP00010034154	ENSLCAP00010000206	ENSLCAP00010034154	RUN domain-containing protein.	UV radiation resistance associated gene.	0.520
ENSLCAP00010000206	LOC108885638	ENSLCAP00010000206	ENSLCAP00010048170	RUN domain-containing protein.	Uncharacterized protein.	0.415
ENSLCAP00010000206	RAB7A	ENSLCAP00010000206	ENSLCAP00010038954	RUN domain-containing protein.	Uncharacterized protein.	0.415
ENSLCAP00010000206	epg5	ENSLCAP00010000206	ENSLCAP00010060525	RUN domain-containing protein.	Uncharacterized protein.	0.416
ENSLCAP00010000206	snap29	ENSLCAP00010000206	ENSLCAP00010003655	RUN domain-containing protein.	Uncharacterized protein.	0.506
ENSLCAP00010000206	stx17	ENSLCAP00010000206	ENSLCAP00010012155	RUN domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.471
ENSLCAP00010000206	vps11	ENSLCAP00010000206	ENSLCAP00010022507	RUN domain-containing protein.	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.	0.533
ENSLCAP00010000206	vps39	ENSLCAP00010000206	ENSLCAP00010022361	RUN domain-containing protein.	CNH domain-containing protein.	0.558
ENSLCAP00010004060	GOSR1	ENSLCAP00010004060	ENSLCAP00010045725	USO1 vesicle transport factor.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.940
ENSLCAP00010004060	LOC108877381	ENSLCAP00010004060	ENSLCAP00010054325	USO1 vesicle transport factor.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.818
ENSLCAP00010004060	LOC108883745	ENSLCAP00010004060	ENSLCAP00010051382	USO1 vesicle transport factor.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.818
ENSLCAP00010004060	bet1	ENSLCAP00010004060	ENSLCAP00010039568	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein.	0.959
ENSLCAP00010004060	bet1-2	ENSLCAP00010004060	ENSLCAP00010040675	USO1 vesicle transport factor.	BET1 homolog.	0.959
ENSLCAP00010004060	gosr1	ENSLCAP00010004060	ENSLCAP00010026755	USO1 vesicle transport factor.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.972
ENSLCAP00010004060	gosr2	ENSLCAP00010004060	ENSLCAP00010014388	USO1 vesicle transport factor.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.994
ENSLCAP00010004060	stx12	ENSLCAP00010004060	ENSLCAP00010015807	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
ENSLCAP00010004060	stx17	ENSLCAP00010004060	ENSLCAP00010012155	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.681
ENSLCAP00010004060	stx5	ENSLCAP00010004060	ENSLCAP00010042868	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.996
ENSLCAP00010004060	stx7	ENSLCAP00010004060	ENSLCAP00010041786	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
ENSLCAP00010004060	tsnare1	ENSLCAP00010004060	ENSLCAP00010040747	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518