61 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108879473	Rab-GAP TBC domain-containing protein. (414 aa)
	LOC108878663	GDNF family receptor alpha; Belongs to the GDNFR family. (464 aa)
	nkx3-1	Homeobox domain-containing protein. (195 aa)
	ENSLCAP00010059212	AT rich interactive domain 4A (RBP1-like). (1281 aa)
	gata1	Uncharacterized protein. (365 aa)
	rusc1	Uncharacterized protein. (1923 aa)
	ENSLCAP00010053757	Anti-Mullerian hormone. (480 aa)
	ENSLCAP00010052820	Rad21_Rec8 domain-containing protein. (418 aa)
	LOC108872947	NR LBD domain-containing protein. (263 aa)
	srd5a1	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (265 aa)
	ENSLCAP00010051031	Alpha thalassemia/mental retardation syndrome X-linked, like. (1695 aa)
	LOC108893617	Uncharacterized protein. (765 aa)
	tfpt	Uncharacterized protein. (199 aa)
	tmf1	TMF_TATA_bd domain-containing protein. (1161 aa)
	LOC108886611	Uncharacterized protein. (389 aa)
	ercc1	Uncharacterized protein. (360 aa)
	ENSLCAP00010043543	Inhibin subunit beta Aa. (398 aa)
	bcl2l11	Bclx_interact domain-containing protein. (284 aa)
	Tex11	Uncharacterized protein. (479 aa)
	KIF18A	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (914 aa)
	Sfrp2	Secreted frizzled-related protein 2. (284 aa)
	ENSLCAP00010041366	GATA binding protein 1a. (416 aa)
	ENSLCAP00010039003	Fanconi_A_N domain-containing protein. (992 aa)
	Msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (908 aa)
	ENSLCAP00010038111	Wilms tumor 1a. (443 aa)
	LOC108900802	Rad21_Rec8_N domain-containing protein. (534 aa)
	LOC108887630	TGF_BETA_2 domain-containing protein. (400 aa)
	tcf21	BHLH domain-containing protein. (176 aa)
	Tbc1d20	TBC1 domain family, member 20. (388 aa)
	sf1	CCHC-type domain-containing protein. (679 aa)
	ENSLCAP00010032564	Alpha thalassemia/mental retardation syndrome X-linked homolog (human). (1999 aa)
	LOC108882308	S5A_REDUCTASE domain-containing protein. (275 aa)
	Msc	Musculin (activated B-cell factor-1). (225 aa)
	ENSLCAP00010028729	Cytochrome P450, family 1, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (522 aa)
	LOC108876833	Uncharacterized protein. (428 aa)
	ENSLCAP00010027290	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (278 aa)
	LOC108888912	Uncharacterized protein. (486 aa)
	NR0B1	NR LBD domain-containing protein. (268 aa)
	LOC108886282	Uncharacterized protein; Belongs to the cytochrome P450 family. (559 aa)
	sgpl1	Uncharacterized protein. (576 aa)
	prdx4	Thioredoxin domain-containing protein. (257 aa)
	Rhobtb3	Si:dkey-6b12.5. (647 aa)
	bax	Uncharacterized protein. (192 aa)
	inhba	TGF_BETA_2 domain-containing protein. (400 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)
	LOC108895804	TIR domain-containing protein; Belongs to the Toll-like receptor family. (890 aa)
	srd5a2	3-oxo-5-alpha-steroid 4-dehydrogenase (NADP(+)). (252 aa)
	ENSLCAP00010011538	Translocase of outer mitochondrial membrane 20. (1267 aa)
	Gfra1	Gdnf family receptor alpha 1b. (417 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	ENSLCAP00010010496	Uncharacterized protein. (695 aa)
	Scaper	S-phase cyclin A-associated protein in the ER. (1424 aa)
	wt1	Uncharacterized protein. (481 aa)
	LOC108882770	Uncharacterized protein. (691 aa)
	ENSLCAP00010007907	BTB domain-containing protein. (585 aa)
	ENSLCAP00010005369	TGF_BETA_2 domain-containing protein. (379 aa)
	eif2s2	eIF2B_5 domain-containing protein. (332 aa)
	LOC108872914	BTB domain-containing protein. (556 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)
	ENSLCAP00010000828	PH domain-containing protein. (214 aa)
	KLHL10	BTB domain-containing protein. (576 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010001596	ENSLCAP00010005369	ENSLCAP00010001596	ENSLCAP00010005369	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.471
ENSLCAP00010001596	ENSLCAP00010043543	ENSLCAP00010001596	ENSLCAP00010043543	Mothers against decapentaplegic homolog.	Inhibin subunit beta Aa.	0.471
ENSLCAP00010001596	LOC108887630	ENSLCAP00010001596	ENSLCAP00010037291	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.471
ENSLCAP00010001596	LOC108896340	ENSLCAP00010001596	ENSLCAP00010011045	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
ENSLCAP00010001596	SMAD4	ENSLCAP00010001596	ENSLCAP00010013760	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
ENSLCAP00010001596	inhba	ENSLCAP00010001596	ENSLCAP00010013888	Mothers against decapentaplegic homolog.	TGF_BETA_2 domain-containing protein.	0.471
ENSLCAP00010005369	ENSLCAP00010001596	ENSLCAP00010005369	ENSLCAP00010001596	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.471
ENSLCAP00010005369	ENSLCAP00010043543	ENSLCAP00010005369	ENSLCAP00010043543	TGF_BETA_2 domain-containing protein.	Inhibin subunit beta Aa.	0.487
ENSLCAP00010005369	LOC108887630	ENSLCAP00010005369	ENSLCAP00010037291	TGF_BETA_2 domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.904
ENSLCAP00010005369	LOC108896340	ENSLCAP00010005369	ENSLCAP00010011045	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.471
ENSLCAP00010005369	SMAD4	ENSLCAP00010005369	ENSLCAP00010013760	TGF_BETA_2 domain-containing protein.	Mothers against decapentaplegic homolog.	0.471
ENSLCAP00010005369	inhba	ENSLCAP00010005369	ENSLCAP00010013888	TGF_BETA_2 domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.487
ENSLCAP00010011538	ENSLCAP00010032564	ENSLCAP00010011538	ENSLCAP00010032564	Translocase of outer mitochondrial membrane 20.	Alpha thalassemia/mental retardation syndrome X-linked homolog (human).	0.715
ENSLCAP00010011538	ENSLCAP00010051031	ENSLCAP00010011538	ENSLCAP00010051031	Translocase of outer mitochondrial membrane 20.	Alpha thalassemia/mental retardation syndrome X-linked, like.	0.715
ENSLCAP00010011538	ENSLCAP00010059212	ENSLCAP00010011538	ENSLCAP00010059212	Translocase of outer mitochondrial membrane 20.	AT rich interactive domain 4A (RBP1-like).	0.637
ENSLCAP00010011538	tfpt	ENSLCAP00010011538	ENSLCAP00010049526	Translocase of outer mitochondrial membrane 20.	Uncharacterized protein.	0.527
ENSLCAP00010032564	ENSLCAP00010011538	ENSLCAP00010032564	ENSLCAP00010011538	Alpha thalassemia/mental retardation syndrome X-linked homolog (human).	Translocase of outer mitochondrial membrane 20.	0.715
ENSLCAP00010032564	ENSLCAP00010059212	ENSLCAP00010032564	ENSLCAP00010059212	Alpha thalassemia/mental retardation syndrome X-linked homolog (human).	AT rich interactive domain 4A (RBP1-like).	0.715
ENSLCAP00010038111	ENSLCAP00010053757	ENSLCAP00010038111	ENSLCAP00010053757	Wilms tumor 1a.	Anti-Mullerian hormone.	0.406
ENSLCAP00010038111	tcf21	ENSLCAP00010038111	ENSLCAP00010035168	Wilms tumor 1a.	BHLH domain-containing protein.	0.461