(16 nodes) Regulation of fibroblast migration network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bag4	BAG domain-containing protein. (394 aa)
	itgb1bp1	PID domain-containing protein. (198 aa)
	gna12	Uncharacterized protein. (385 aa)
	ENSLCAP00010004956	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (155 aa)
	ENSLCAP00010007608	Aquaporin 1a (Colton blood group), tandem duplicate 2; Belongs to the MIP/aquaporin (TC 1.A.8) family. (277 aa)
	LOC108883341	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (265 aa)
	LOC108883342	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (280 aa)
	ENSLCAP00010013583	A kinase (PRKA) anchor protein 12b. (1224 aa)
	LOC108876160	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	LOC108898004	Uncharacterized protein. (378 aa)
	ENSLCAP00010019756	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2. (661 aa)
	Cunh5orf30	Zgc:194281. (213 aa)
	wdpcp	Uncharacterized protein. (755 aa)
	ENSLCAP00010055093	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1. (681 aa)
	LOC108876453	Uncharacterized protein. (377 aa)
	ENSLCAP00010032246	Battenin. (378 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010004956	LOC108876160	ENSLCAP00010004956	ENSLCAP00010015620	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.686
ENSLCAP00010019756	ENSLCAP00010055093	ENSLCAP00010019756	ENSLCAP00010055093	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	0.992
ENSLCAP00010055093	ENSLCAP00010019756	ENSLCAP00010055093	ENSLCAP00010019756	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1.	Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.	0.992
LOC108876160	ENSLCAP00010004956	ENSLCAP00010015620	ENSLCAP00010004956	Transforming growth factor beta; Belongs to the TGF-beta family.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.686
LOC108876453	LOC108898004	ENSLCAP00010030179	ENSLCAP00010019653	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC108876453	gna12	ENSLCAP00010030179	ENSLCAP00010055531	Uncharacterized protein.	Uncharacterized protein.	0.901
LOC108898004	LOC108876453	ENSLCAP00010019653	ENSLCAP00010030179	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC108898004	gna12	ENSLCAP00010019653	ENSLCAP00010055531	Uncharacterized protein.	Uncharacterized protein.	0.901
gna12	LOC108876453	ENSLCAP00010055531	ENSLCAP00010030179	Uncharacterized protein.	Uncharacterized protein.	0.901
gna12	LOC108898004	ENSLCAP00010055531	ENSLCAP00010019653	Uncharacterized protein.	Uncharacterized protein.	0.901