(45 nodes) Peptidase activator activity network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010000256	FIIND domain-containing protein. (1226 aa)
	bcl2l13	Uncharacterized protein. (551 aa)
	Psme1	Proteasome activator subunit 1. (265 aa)
	LOC108874380	Uncharacterized protein. (256 aa)
	wdr48	WD_REPEATS_REGION domain-containing protein. (679 aa)
	LOC108875435	Uncharacterized protein; Belongs to the peptidase C1 family. (325 aa)
	LOC108883066	Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (695 aa)
	psmd14	MPN domain-containing protein. (310 aa)
	psenen	Uncharacterized protein. (144 aa)
	pcolce2	Uncharacterized protein. (435 aa)
	CAV3	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (111 aa)
	clpx	Uncharacterized protein. (622 aa)
	ENSLCAP00010022551	Uncharacterized protein. (360 aa)
	Casp8ap2	Uncharacterized protein. (1358 aa)
	PSME3	Proteasome activator subunit 3. (272 aa)
	ENSLCAP00010033183	Deoxyribonuclease; Belongs to the DNase I family. (288 aa)
	ebag9	Uncharacterized protein; May participate in suppression of cell proliferation and induces apoptotic cell death through activation of interleukin-1-beta converting enzyme (ICE)-like proteases. (216 aa)
	psme4	Uncharacterized protein. (1847 aa)
	LOC108897063	Uncharacterized protein. (565 aa)
	ENSLCAP00010035178	DUF4203 domain-containing protein. (249 aa)
	ENSLCAP00010035770	RPN13_C domain-containing protein. (412 aa)
	LOC108898553	Uncharacterized protein. (256 aa)
	bad	Uncharacterized protein. (229 aa)
	LOC108873152	DUF4203 domain-containing protein. (440 aa)
	Sfrp2	Secreted frizzled-related protein 2. (284 aa)
	LOC108880424	DUF4203 domain-containing protein. (388 aa)
	ENSLCAP00010044598	DUF4203 domain-containing protein. (322 aa)
	ENSLCAP00010044755	Si:ch73-252p3.1. (1199 aa)
	ENSLCAP00010044762	Uncharacterized protein. (873 aa)
	LOC108893499	Uncharacterized protein. (484 aa)
	LOC108886611	Uncharacterized protein. (389 aa)
	ctsc	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (457 aa)
	vsir	Ig-like domain-containing protein. (297 aa)
	ENSLCAP00010049248	Uncharacterized protein. (281 aa)
	ENSLCAP00010049581	Uncharacterized protein. (1795 aa)
	FBLN1	Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (690 aa)
	LOC108877025	Uncharacterized protein; Belongs to the peptidase C1 family. (331 aa)
	tank	TBD domain-containing protein. (534 aa)
	ENSLCAP00010056777	Caveolin; May act as a scaffolding protein within caveolar membranes. Interacts directly with G-protein alpha subunits and can functionally regulate their activity; Belongs to the caveolin family. (150 aa)
	LOC108874758	Endo/exonuclease/phosphatase domain-containing protein. (328 aa)
	adrm1	RPN13_C domain-containing protein. (411 aa)
	psme2	Uncharacterized protein. (341 aa)
	LOC108902821	Uncharacterized protein. (2495 aa)
	nkx3-1	Homeobox domain-containing protein. (195 aa)
	ENSLCAP00010060028	Proteasome activator subunit 3. (272 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010035770	ENSLCAP00010049581	ENSLCAP00010035770	ENSLCAP00010049581	RPN13_C domain-containing protein.	Uncharacterized protein.	0.751
ENSLCAP00010035770	ENSLCAP00010060028	ENSLCAP00010035770	ENSLCAP00010060028	RPN13_C domain-containing protein.	Proteasome activator subunit 3.	0.585
ENSLCAP00010035770	LOC108874380	ENSLCAP00010035770	ENSLCAP00010005896	RPN13_C domain-containing protein.	Uncharacterized protein.	0.559
ENSLCAP00010035770	LOC108898553	ENSLCAP00010035770	ENSLCAP00010037704	RPN13_C domain-containing protein.	Uncharacterized protein.	0.559
ENSLCAP00010035770	PSME3	ENSLCAP00010035770	ENSLCAP00010024749	RPN13_C domain-containing protein.	Proteasome activator subunit 3.	0.585
ENSLCAP00010035770	Psme1	ENSLCAP00010035770	ENSLCAP00010005466	RPN13_C domain-containing protein.	Proteasome activator subunit 1.	0.570
ENSLCAP00010035770	adrm1	ENSLCAP00010035770	ENSLCAP00010056973	RPN13_C domain-containing protein.	RPN13_C domain-containing protein.	0.901
ENSLCAP00010035770	psmd14	ENSLCAP00010035770	ENSLCAP00010016870	RPN13_C domain-containing protein.	MPN domain-containing protein.	0.977
ENSLCAP00010035770	psme2	ENSLCAP00010035770	ENSLCAP00010058384	RPN13_C domain-containing protein.	Uncharacterized protein.	0.555
ENSLCAP00010035770	psme4	ENSLCAP00010035770	ENSLCAP00010034250	RPN13_C domain-containing protein.	Uncharacterized protein.	0.751
ENSLCAP00010049581	ENSLCAP00010035770	ENSLCAP00010049581	ENSLCAP00010035770	Uncharacterized protein.	RPN13_C domain-containing protein.	0.751
ENSLCAP00010049581	adrm1	ENSLCAP00010049581	ENSLCAP00010056973	Uncharacterized protein.	RPN13_C domain-containing protein.	0.751
ENSLCAP00010049581	psmd14	ENSLCAP00010049581	ENSLCAP00010016870	Uncharacterized protein.	MPN domain-containing protein.	0.847
ENSLCAP00010049581	psme4	ENSLCAP00010049581	ENSLCAP00010034250	Uncharacterized protein.	Uncharacterized protein.	0.901
ENSLCAP00010060028	ENSLCAP00010035770	ENSLCAP00010060028	ENSLCAP00010035770	Proteasome activator subunit 3.	RPN13_C domain-containing protein.	0.585
ENSLCAP00010060028	Psme1	ENSLCAP00010060028	ENSLCAP00010005466	Proteasome activator subunit 3.	Proteasome activator subunit 1.	0.545
ENSLCAP00010060028	adrm1	ENSLCAP00010060028	ENSLCAP00010056973	Proteasome activator subunit 3.	RPN13_C domain-containing protein.	0.543
ENSLCAP00010060028	psmd14	ENSLCAP00010060028	ENSLCAP00010016870	Proteasome activator subunit 3.	MPN domain-containing protein.	0.803
ENSLCAP00010060028	psme2	ENSLCAP00010060028	ENSLCAP00010058384	Proteasome activator subunit 3.	Uncharacterized protein.	0.448
LOC108874380	ENSLCAP00010035770	ENSLCAP00010005896	ENSLCAP00010035770	Uncharacterized protein.	RPN13_C domain-containing protein.	0.559