(18 nodes) Neutrophil chemotaxis network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108887078	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (383 aa)
	Trim33	Tripartite motif containing 33. (1241 aa)
	SRP54	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (500 aa)
	bsg	Uncharacterized protein. (390 aa)
	ppib	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (216 aa)
	ENSLCAP00010010539	Endothelin 2. (170 aa)
	ENSLCAP00010011665	MARVEL domain-containing protein. (97 aa)
	ENSLCAP00010017114	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (342 aa)
	LOC108901953	SCY domain-containing protein. (99 aa)
	ENSLCAP00010026871	Galectin. (277 aa)
	LOC108893952	MFS domain-containing protein. (450 aa)
	ENSLCAP00010044471	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family. (363 aa)
	ENSLCAP00010045964	Phosphoinositide kinase, FYVE finger containing. (2057 aa)
	LOC108891596	Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (504 aa)
	ENSLCAP00010049680	Golgi brefeldin A resistant guanine nucleotide exchange factor 1. (1874 aa)
	ENSLCAP00010050511	Galectin. (401 aa)
	slc37a4	MFS domain-containing protein. (429 aa)
	ENSLCAP00010057919	Chemokine (C-C motif) ligand 25b. (95 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010017114	ENSLCAP00010044471	ENSLCAP00010017114	ENSLCAP00010044471	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.902
ENSLCAP00010017114	ENSLCAP00010057919	ENSLCAP00010017114	ENSLCAP00010057919	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 25b.	0.470
ENSLCAP00010017114	LOC108887078	ENSLCAP00010017114	ENSLCAP00010060273	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.917
ENSLCAP00010044471	ENSLCAP00010017114	ENSLCAP00010044471	ENSLCAP00010017114	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.902
ENSLCAP00010044471	ENSLCAP00010057919	ENSLCAP00010044471	ENSLCAP00010057919	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 25b.	0.470
ENSLCAP00010044471	LOC108887078	ENSLCAP00010044471	ENSLCAP00010060273	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.918
ENSLCAP00010057919	ENSLCAP00010017114	ENSLCAP00010057919	ENSLCAP00010017114	Chemokine (C-C motif) ligand 25b.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.470
ENSLCAP00010057919	ENSLCAP00010044471	ENSLCAP00010057919	ENSLCAP00010044471	Chemokine (C-C motif) ligand 25b.	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.470
ENSLCAP00010057919	LOC108887078	ENSLCAP00010057919	ENSLCAP00010060273	Chemokine (C-C motif) ligand 25b.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.470
ENSLCAP00010057919	LOC108901953	ENSLCAP00010057919	ENSLCAP00010018408	Chemokine (C-C motif) ligand 25b.	SCY domain-containing protein.	0.588
LOC108887078	ENSLCAP00010017114	ENSLCAP00010060273	ENSLCAP00010017114	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.917
LOC108887078	ENSLCAP00010044471	ENSLCAP00010060273	ENSLCAP00010044471	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.918
LOC108887078	ENSLCAP00010057919	ENSLCAP00010060273	ENSLCAP00010057919	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) ligand 25b.	0.470
LOC108901953	ENSLCAP00010057919	ENSLCAP00010018408	ENSLCAP00010057919	SCY domain-containing protein.	Chemokine (C-C motif) ligand 25b.	0.588