STRINGSTRING
Znf622 Znf622 utp23 utp23 nsa2 nsa2 mphosph10 mphosph10 ENSLCAP00010047480 ENSLCAP00010047480 ftsj3 ftsj3 utp25 utp25 ENSLCAP00010050097 ENSLCAP00010050097 ENSLCAP00010050308 ENSLCAP00010050308 Srfbp1 Srfbp1 ENSLCAP00010051016 ENSLCAP00010051016 imp3 imp3 ENSLCAP00010051751 ENSLCAP00010051751 imp4 imp4 Ebna1bp2 Ebna1bp2 rsl1d1 rsl1d1 Riok3 Riok3 Utp6 Utp6 hunk hunk ENSLCAP00010057050 ENSLCAP00010057050 Tsr1 Tsr1 ENSLCAP00010058439 ENSLCAP00010058439 Ltv1 Ltv1 Wdr46 Wdr46 rrp9 rrp9 nop9 nop9 ENSLCAP00010015403 ENSLCAP00010015403 Wdr36 Wdr36 ENSLCAP00010013748 ENSLCAP00010013748 nop14 nop14 Fbl Fbl ENSLCAP00010011529 ENSLCAP00010011529 nol10 nol10 fcf1 fcf1 ENSLCAP00010010685 ENSLCAP00010010685 ENSLCAP00010007664 ENSLCAP00010007664 ENSLCAP00010007568 ENSLCAP00010007568 rrp15 rrp15 utp11 utp11 ngdn ngdn EIF6 EIF6 kri1 kri1 ENSLCAP00010045035 ENSLCAP00010045035 utp4 utp4 mrto4 mrto4 LOC108898053 LOC108898053 LOC108873066 LOC108873066 LOC108901883 LOC108901883 emg1 emg1 Noc4l Noc4l rrp7a rrp7a rrs1 rrs1 tbl3 tbl3 bop1 bop1 ENSLCAP00010030349 ENSLCAP00010030349 ENSLCAP00010030480 ENSLCAP00010030480 LOC108897145 LOC108897145 LOC108897142 LOC108897142 dcaf13 dcaf13 LOC108881275 LOC108881275 Krr1 Krr1 ENSLCAP00010036493 ENSLCAP00010036493 WDR12 WDR12 ENSLCAP00010038117 ENSLCAP00010038117 pes1 pes1 riok2 riok2 nol6 nol6 bysl bysl
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Znf622Zinc finger protein 622. (467 aa)
utp23Uncharacterized protein. (254 aa)
nsa2Uncharacterized protein. (260 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (689 aa)
ENSLCAP00010047480WD_REPEATS_REGION domain-containing protein. (483 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (861 aa)
utp25INTEIN_C_TER domain-containing protein. (765 aa)
ENSLCAP00010050097WD repeat domain 74. (383 aa)
ENSLCAP00010050308BMS1 ribosome biogenesis factor. (1235 aa)
Srfbp1Uncharacterized protein. (361 aa)
ENSLCAP00010051016X-ray repair cross-complementing protein 5; Single-stranded DNA-dependent ATP-dependent helicase. Belongs to the ku80 family. (666 aa)
imp3S4 RNA-binding domain-containing protein. (183 aa)
ENSLCAP00010051751UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae). (378 aa)
imp4Brix domain-containing protein. (291 aa)
Ebna1bp2EBNA1 binding protein 2. (295 aa)
rsl1d1Uncharacterized protein. (377 aa)
Riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (498 aa)
Utp6Uncharacterized protein. (95 aa)
hunkProtein kinase domain-containing protein. (686 aa)
ENSLCAP00010057050WD repeat domain 3. (943 aa)
Tsr1TSR1, 20S rRNA accumulation, homolog (S. cerevisiae). (841 aa)
ENSLCAP00010058439WD_REPEATS_REGION domain-containing protein. (417 aa)
Ltv1LTV1 ribosome biogenesis factor. (460 aa)
Wdr46WD repeat domain 46. (572 aa)
rrp9WD_REPEATS_REGION domain-containing protein. (503 aa)
nop9Uncharacterized protein. (616 aa)
ENSLCAP00010015403NOP56 ribonucleoprotein homolog. (564 aa)
Wdr36WD repeat domain 36. (901 aa)
ENSLCAP00010013748Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (575 aa)
nop14Uncharacterized protein. (1153 aa)
FblFibrillarin. (266 aa)
ENSLCAP00010011529Uncharacterized protein. (190 aa)
nol10NUC153 domain-containing protein. (757 aa)
fcf1PINc domain-containing protein. (235 aa)
ENSLCAP00010010685NOC2-like nucleolar associated transcriptional repressor. (745 aa)
ENSLCAP00010007664Programmed cell death 11. (868 aa)
ENSLCAP00010007568Uncharacterized protein. (184 aa)
rrp15Uncharacterized protein. (256 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
ngdnUncharacterized protein. (319 aa)
EIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (234 aa)
kri1Kri1_C domain-containing protein. (771 aa)
ENSLCAP00010045035Ribosome production factor 1 homolog. (371 aa)
utp4WD_REPEATS_REGION domain-containing protein. (685 aa)
mrto4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (240 aa)
LOC108898053Protein kinase domain-containing protein. (504 aa)
LOC108873066Uncharacterized protein. (926 aa)
LOC108901883ZP domain-containing protein. (400 aa)
emg1Uncharacterized protein. (237 aa)
Noc4lNucleolar complex associated 4 homolog. (537 aa)
rrp7aUncharacterized protein. (293 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (347 aa)
tbl3WD_REPEATS_REGION domain-containing protein. (942 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (759 aa)
ENSLCAP00010030349Protein MAK16 homolog; Belongs to the MAK16 family. (339 aa)
ENSLCAP00010030480UTP20 small subunit (SSU) processome component. (2739 aa)
LOC108897145Uncharacterized protein. (786 aa)
LOC108897142Uncharacterized protein. (750 aa)
dcaf13WD_REPEATS_REGION domain-containing protein. (445 aa)
LOC108881275Brix domain-containing protein. (357 aa)
Krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (389 aa)
ENSLCAP00010036493Uncharacterized protein. (160 aa)
WDR12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (404 aa)
ENSLCAP00010038117NOP58 ribonucleoprotein homolog (yeast). (566 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (586 aa)
riok2RIO domain-containing protein. (519 aa)
nol6Nucleolar protein 6. (1143 aa)
byslUncharacterized protein. (436 aa)
Your Current Organism:
Lates calcarifer
NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch
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