14 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010007568	Uncharacterized protein. (184 aa)
	ENSLCAP00010011529	Uncharacterized protein. (190 aa)
	nop14	Uncharacterized protein. (1153 aa)
	ENSLCAP00010013748	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (575 aa)
	nop9	Uncharacterized protein. (616 aa)
	Noc4l	Nucleolar complex associated 4 homolog. (537 aa)
	LOC108897142	Uncharacterized protein. (750 aa)
	ENSLCAP00010036493	Uncharacterized protein. (160 aa)
	bysl	Uncharacterized protein. (436 aa)
	ftsj3	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (861 aa)
	Riok3	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (498 aa)
	Tsr1	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae). (841 aa)
	Ltv1	LTV1 ribosome biogenesis factor. (460 aa)
	riok2	RIO domain-containing protein. (519 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010007568	Ltv1	ENSLCAP00010007568	ENSLCAP00010059444	Uncharacterized protein.	LTV1 ribosome biogenesis factor.	0.726
ENSLCAP00010007568	Tsr1	ENSLCAP00010007568	ENSLCAP00010058405	Uncharacterized protein.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.596
ENSLCAP00010007568	bysl	ENSLCAP00010007568	ENSLCAP00010038800	Uncharacterized protein.	Uncharacterized protein.	0.775
ENSLCAP00010011529	ENSLCAP00010013748	ENSLCAP00010011529	ENSLCAP00010013748	Uncharacterized protein.	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.546
ENSLCAP00010011529	LOC108897142	ENSLCAP00010011529	ENSLCAP00010031009	Uncharacterized protein.	Uncharacterized protein.	0.739
ENSLCAP00010011529	Ltv1	ENSLCAP00010011529	ENSLCAP00010059444	Uncharacterized protein.	LTV1 ribosome biogenesis factor.	0.899
ENSLCAP00010011529	Noc4l	ENSLCAP00010011529	ENSLCAP00010023216	Uncharacterized protein.	Nucleolar complex associated 4 homolog.	0.989
ENSLCAP00010011529	Riok3	ENSLCAP00010011529	ENSLCAP00010053636	Uncharacterized protein.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.459
ENSLCAP00010011529	Tsr1	ENSLCAP00010011529	ENSLCAP00010058405	Uncharacterized protein.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.900
ENSLCAP00010011529	bysl	ENSLCAP00010011529	ENSLCAP00010038800	Uncharacterized protein.	Uncharacterized protein.	0.985
ENSLCAP00010011529	ftsj3	ENSLCAP00010011529	ENSLCAP00010047832	Uncharacterized protein.	pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.	0.915
ENSLCAP00010011529	nop9	ENSLCAP00010011529	ENSLCAP00010015795	Uncharacterized protein.	Uncharacterized protein.	0.593
ENSLCAP00010011529	riok2	ENSLCAP00010011529	ENSLCAP00010060516	Uncharacterized protein.	RIO domain-containing protein.	0.771
ENSLCAP00010013748	ENSLCAP00010011529	ENSLCAP00010013748	ENSLCAP00010011529	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Uncharacterized protein.	0.546
ENSLCAP00010013748	LOC108897142	ENSLCAP00010013748	ENSLCAP00010031009	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Uncharacterized protein.	0.562
ENSLCAP00010013748	Ltv1	ENSLCAP00010013748	ENSLCAP00010059444	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	LTV1 ribosome biogenesis factor.	0.997
ENSLCAP00010013748	Noc4l	ENSLCAP00010013748	ENSLCAP00010023216	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Nucleolar complex associated 4 homolog.	0.510
ENSLCAP00010013748	Riok3	ENSLCAP00010013748	ENSLCAP00010053636	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	0.641
ENSLCAP00010013748	Tsr1	ENSLCAP00010013748	ENSLCAP00010058405	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	TSR1, 20S rRNA accumulation, homolog (S. cerevisiae).	0.932
ENSLCAP00010013748	bysl	ENSLCAP00010013748	ENSLCAP00010038800	Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family.	Uncharacterized protein.	0.930