(14 nodes) Regulation of nuclear cell cycle DNA replication network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	cdc7	Protein kinase domain-containing protein. (610 aa)
	ENSLCAP00010046169	Si:dkey-217d24.6. (677 aa)
	zmpste24	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (467 aa)
	ENSLCAP00010042308	INO80 complex subunit. (1413 aa)
	ENSLCAP00010035202	Uncharacterized protein. (1401 aa)
	ENSLCAP00010035197	Uncharacterized protein. (525 aa)
	ENSLCAP00010032564	Alpha thalassemia/mental retardation syndrome X-linked homolog (human). (1999 aa)
	aicda	CMP/dCMP-type deaminase domain-containing protein. (211 aa)
	LOC108898738	DBF4-type domain-containing protein. (841 aa)
	ENSLCAP00010004763	Uncharacterized protein. (597 aa)
	LOC108886170	Uncharacterized protein. (835 aa)
	dbf4	Uncharacterized protein. (628 aa)
	Cdt1	Chromatin licensing and DNA replication factor 1. (482 aa)
	ENSLCAP00010051031	Alpha thalassemia/mental retardation syndrome X-linked, like. (1695 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdt1	LOC108898738	ENSLCAP00010000317	ENSLCAP00010006246	Chromatin licensing and DNA replication factor 1.	DBF4-type domain-containing protein.	0.811
Cdt1	cdc7	ENSLCAP00010000317	ENSLCAP00010048952	Chromatin licensing and DNA replication factor 1.	Protein kinase domain-containing protein.	0.931
Cdt1	dbf4	ENSLCAP00010000317	ENSLCAP00010003550	Chromatin licensing and DNA replication factor 1.	Uncharacterized protein.	0.914
LOC108898738	Cdt1	ENSLCAP00010006246	ENSLCAP00010000317	DBF4-type domain-containing protein.	Chromatin licensing and DNA replication factor 1.	0.811
LOC108898738	cdc7	ENSLCAP00010006246	ENSLCAP00010048952	DBF4-type domain-containing protein.	Protein kinase domain-containing protein.	0.976
cdc7	Cdt1	ENSLCAP00010048952	ENSLCAP00010000317	Protein kinase domain-containing protein.	Chromatin licensing and DNA replication factor 1.	0.931
cdc7	LOC108898738	ENSLCAP00010048952	ENSLCAP00010006246	Protein kinase domain-containing protein.	DBF4-type domain-containing protein.	0.976
cdc7	dbf4	ENSLCAP00010048952	ENSLCAP00010003550	Protein kinase domain-containing protein.	Uncharacterized protein.	0.999
dbf4	Cdt1	ENSLCAP00010003550	ENSLCAP00010000317	Uncharacterized protein.	Chromatin licensing and DNA replication factor 1.	0.914
dbf4	cdc7	ENSLCAP00010003550	ENSLCAP00010048952	Uncharacterized protein.	Protein kinase domain-containing protein.	0.999