(12 nodes) Anterior/posterior axon guidance network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	VANGL2	Vang-like protein. (525 aa)
	Unc5b	Unc-5 netrin receptor B. (943 aa)
	lhx1	Uncharacterized protein. (407 aa)
	cunh1orf53	Uncharacterized protein. (478 aa)
	ENSLCAP00010014015	Unc-5 netrin receptor C. (956 aa)
	unc5a	Uncharacterized protein. (903 aa)
	ENSLCAP00010029261	Scribbled planar cell polarity protein. (1744 aa)
	Lrrc1	Leucine rich repeat containing 1. (856 aa)
	ENSLCAP00010036052	Vang-like protein. (507 aa)
	ENSLCAP00010043804	Uncharacterized protein. (178 aa)
	lhx2	Uncharacterized protein. (417 aa)
	unc5c	Uncharacterized protein. (955 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010029261	ENSLCAP00010036052	ENSLCAP00010029261	ENSLCAP00010036052	Scribbled planar cell polarity protein.	Vang-like protein.	0.552
ENSLCAP00010029261	VANGL2	ENSLCAP00010029261	ENSLCAP00010001985	Scribbled planar cell polarity protein.	Vang-like protein.	0.552
ENSLCAP00010036052	ENSLCAP00010029261	ENSLCAP00010036052	ENSLCAP00010029261	Vang-like protein.	Scribbled planar cell polarity protein.	0.552
ENSLCAP00010036052	Lrrc1	ENSLCAP00010036052	ENSLCAP00010030574	Vang-like protein.	Leucine rich repeat containing 1.	0.552
Lrrc1	ENSLCAP00010036052	ENSLCAP00010030574	ENSLCAP00010036052	Leucine rich repeat containing 1.	Vang-like protein.	0.552
Lrrc1	VANGL2	ENSLCAP00010030574	ENSLCAP00010001985	Leucine rich repeat containing 1.	Vang-like protein.	0.552
VANGL2	ENSLCAP00010029261	ENSLCAP00010001985	ENSLCAP00010029261	Vang-like protein.	Scribbled planar cell polarity protein.	0.552
VANGL2	Lrrc1	ENSLCAP00010001985	ENSLCAP00010030574	Vang-like protein.	Leucine rich repeat containing 1.	0.552