22 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rb1cc1	ATG11 domain-containing protein. (1651 aa)
	atg16l1	WD_REPEATS_REGION domain-containing protein. (644 aa)
	Stbd1	CBM20 domain-containing protein. (894 aa)
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108883363	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (810 aa)
	ulk2	Protein kinase domain-containing protein. (1040 aa)
	LOC108884012	WD_REPEATS_REGION domain-containing protein. (612 aa)
	ENSLCAP00010018801	WD_REPEATS_REGION domain-containing protein. (394 aa)
	ENSLCAP00010019605	WD repeat domain, phosphoinositide interacting 1. (349 aa)
	Wipi2	WD repeat domain, phosphoinositide interacting 2. (430 aa)
	Atg12	Uncharacterized protein. (127 aa)
	LOC108879275	Protein kinase domain-containing protein. (1026 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	WIPI1	WD repeat domain, phosphoinositide interacting 1. (405 aa)
	ENSLCAP00010035056	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (888 aa)
	Wdr45b	WD repeat domain 45B. (334 aa)
	Atg2a	Autophagy related 2A. (1981 aa)
	ATG2B	Uncharacterized protein. (2076 aa)
	LOC108874432	WD_REPEATS_REGION domain-containing protein. (612 aa)
	Wdr45	WD repeat domain 45. (359 aa)
	ENSLCAP00010051333	Unc-51 like autophagy activating kinase 1a. (797 aa)
	atg14	Galectin domain-containing protein. (555 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATG2B	Atg12	ENSLCAP00010043755	ENSLCAP00010021188	Uncharacterized protein.	Uncharacterized protein.	0.574
ATG2B	Atg2a	ENSLCAP00010043755	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.909
ATG2B	ENSLCAP00010019605	ENSLCAP00010043755	ENSLCAP00010019605	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 1.	0.706
ATG2B	ENSLCAP00010025602	ENSLCAP00010043755	ENSLCAP00010025602	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	ENSLCAP00010035056	ENSLCAP00010043755	ENSLCAP00010035056	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	ENSLCAP00010051333	ENSLCAP00010043755	ENSLCAP00010051333	Uncharacterized protein.	Unc-51 like autophagy activating kinase 1a.	0.807
ATG2B	LOC108879275	ENSLCAP00010043755	ENSLCAP00010024436	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
ATG2B	LOC108883363	ENSLCAP00010043755	ENSLCAP00010009423	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.660
ATG2B	LOC108891182	ENSLCAP00010043755	ENSLCAP00010009358	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.424
ATG2B	WIPI1	ENSLCAP00010043755	ENSLCAP00010025748	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 1.	0.822
ATG2B	Wdr45	ENSLCAP00010043755	ENSLCAP00010051205	Uncharacterized protein.	WD repeat domain 45.	0.655
ATG2B	Wdr45b	ENSLCAP00010043755	ENSLCAP00010041803	Uncharacterized protein.	WD repeat domain 45B.	0.647
ATG2B	Wipi2	ENSLCAP00010043755	ENSLCAP00010020957	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 2.	0.981
ATG2B	atg14	ENSLCAP00010043755	ENSLCAP00010059166	Uncharacterized protein.	Galectin domain-containing protein.	0.522
ATG2B	rb1cc1	ENSLCAP00010043755	ENSLCAP00010010849	Uncharacterized protein.	ATG11 domain-containing protein.	0.612
ATG2B	ulk2	ENSLCAP00010043755	ENSLCAP00010011399	Uncharacterized protein.	Protein kinase domain-containing protein.	0.979
Atg12	ATG2B	ENSLCAP00010021188	ENSLCAP00010043755	Uncharacterized protein.	Uncharacterized protein.	0.574
Atg12	Atg2a	ENSLCAP00010021188	ENSLCAP00010043208	Uncharacterized protein.	Autophagy related 2A.	0.574
Atg12	ENSLCAP00010018801	ENSLCAP00010021188	ENSLCAP00010018801	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.935
Atg12	ENSLCAP00010019605	ENSLCAP00010021188	ENSLCAP00010019605	Uncharacterized protein.	WD repeat domain, phosphoinositide interacting 1.	0.883