(31 nodes) Regulation of protein import into nucleus network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Dmap1	DNA methyltransferase 1 associated protein 1. (459 aa)
	ENSLCAP00010053976	Uncharacterized protein. (294 aa)
	nup58	Uncharacterized protein. (594 aa)
	ect2	Uncharacterized protein. (1130 aa)
	ENSLCAP00010059426	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (174 aa)
	rab23	Uncharacterized protein. (235 aa)
	LOC108875187	Uncharacterized protein. (161 aa)
	Nf1	Neurofibromin 1b. (2806 aa)
	LOC108883996	C3H1-type domain-containing protein. (664 aa)
	NUP54	Uncharacterized protein. (582 aa)
	ENSLCAP00010008602	Junction plakoglobin a. (729 aa)
	LOC108876160	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	bag3	Uncharacterized protein. (572 aa)
	epm2a	Uncharacterized protein. (316 aa)
	Tpr	Translocated promoter region b, nuclear basket protein. (2331 aa)
	Pkig	Uncharacterized protein. (72 aa)
	ENSLCAP00010021275	Uncharacterized protein. (692 aa)
	ENSLCAP00010023513	Apolipoprotein Db; Belongs to the calycin superfamily. Lipocalin family. (181 aa)
	LOC108898754	C3H1-type domain-containing protein. (626 aa)
	LOC108884157	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (186 aa)
	ENSLCAP00010033966	Translocated promoter region a, nuclear basket protein. (1898 aa)
	Nolc1	LisH domain-containing protein. (342 aa)
	Nkd1	Naked cuticle homolog 1 (Drosophila). (364 aa)
	sirt6	Deacetylase sirtuin-type domain-containing protein. (351 aa)
	ptpn5	Uncharacterized protein. (573 aa)
	ipo5	TOG domain-containing protein. (1093 aa)
	Ubr5	Ubiquitin protein ligase E3 component n-recognin 5. (2772 aa)
	smo	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family. (827 aa)
	chp1	Uncharacterized protein. (195 aa)
	LOC108900046	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (184 aa)
	ENSLCAP00010050369	Calcineurin-like EF-hand protein 2. (329 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010033966	NUP54	ENSLCAP00010033966	ENSLCAP00010008371	Translocated promoter region a, nuclear basket protein.	Uncharacterized protein.	0.802
ENSLCAP00010033966	nup58	ENSLCAP00010033966	ENSLCAP00010054346	Translocated promoter region a, nuclear basket protein.	Uncharacterized protein.	0.681
NUP54	ENSLCAP00010033966	ENSLCAP00010008371	ENSLCAP00010033966	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.802
NUP54	Tpr	ENSLCAP00010008371	ENSLCAP00010017614	Uncharacterized protein.	Translocated promoter region b, nuclear basket protein.	0.802
NUP54	ipo5	ENSLCAP00010008371	ENSLCAP00010042030	Uncharacterized protein.	TOG domain-containing protein.	0.774
NUP54	nup58	ENSLCAP00010008371	ENSLCAP00010054346	Uncharacterized protein.	Uncharacterized protein.	0.991
Tpr	NUP54	ENSLCAP00010017614	ENSLCAP00010008371	Translocated promoter region b, nuclear basket protein.	Uncharacterized protein.	0.802
Tpr	nup58	ENSLCAP00010017614	ENSLCAP00010054346	Translocated promoter region b, nuclear basket protein.	Uncharacterized protein.	0.681
ipo5	NUP54	ENSLCAP00010042030	ENSLCAP00010008371	TOG domain-containing protein.	Uncharacterized protein.	0.774
ipo5	nup58	ENSLCAP00010042030	ENSLCAP00010054346	TOG domain-containing protein.	Uncharacterized protein.	0.448
nup58	ENSLCAP00010033966	ENSLCAP00010054346	ENSLCAP00010033966	Uncharacterized protein.	Translocated promoter region a, nuclear basket protein.	0.681
nup58	NUP54	ENSLCAP00010054346	ENSLCAP00010008371	Uncharacterized protein.	Uncharacterized protein.	0.991
nup58	Tpr	ENSLCAP00010054346	ENSLCAP00010017614	Uncharacterized protein.	Translocated promoter region b, nuclear basket protein.	0.681
nup58	ipo5	ENSLCAP00010054346	ENSLCAP00010042030	Uncharacterized protein.	TOG domain-containing protein.	0.448
rab23	smo	ENSLCAP00010059826	ENSLCAP00010048196	Uncharacterized protein.	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	0.620
smo	rab23	ENSLCAP00010048196	ENSLCAP00010059826	Uncharacterized protein; Belongs to the G-protein coupled receptor Fz/Smo family.	Uncharacterized protein.	0.620