16 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tmem182	Uncharacterized protein. (248 aa)
	CD9	Tetraspanin. (228 aa)
	LOC108880494	Uncharacterized protein. (513 aa)
	akirin1	Uncharacterized protein. (224 aa)
	LOC108875178	Tetraspanin. (228 aa)
	ENSLCAP00010020915	Transmembrane protein 182b. (196 aa)
	ENSLCAP00010022960	Uncharacterized protein. (101 aa)
	klf5	Uncharacterized protein. (509 aa)
	Ptgfrn	Si:ch211-132g1.7. (832 aa)
	ENSLCAP00010043635	Ig-like domain-containing protein. (149 aa)
	ENSLCAP00010047527	TGFb_propeptide domain-containing protein. (130 aa)
	ENSLCAP00010047716	Kruppel-like factor 5 like. (230 aa)
	LOC108898929	TGF_BETA_2 domain-containing protein. (389 aa)
	ifrd1	Uncharacterized protein. (432 aa)
	ENSLCAP00010059518	Interferon-related developmental regulator 2. (430 aa)
	bin3	BAR domain-containing protein. (253 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CD9	ENSLCAP00010043635	ENSLCAP00010004292	ENSLCAP00010043635	Tetraspanin.	Ig-like domain-containing protein.	0.736
CD9	Ptgfrn	ENSLCAP00010004292	ENSLCAP00010043623	Tetraspanin.	Si:ch211-132g1.7.	0.736
ENSLCAP00010043635	CD9	ENSLCAP00010043635	ENSLCAP00010004292	Ig-like domain-containing protein.	Tetraspanin.	0.736
ENSLCAP00010043635	LOC108875178	ENSLCAP00010043635	ENSLCAP00010020812	Ig-like domain-containing protein.	Tetraspanin.	0.736
LOC108875178	ENSLCAP00010043635	ENSLCAP00010020812	ENSLCAP00010043635	Tetraspanin.	Ig-like domain-containing protein.	0.736
LOC108875178	Ptgfrn	ENSLCAP00010020812	ENSLCAP00010043623	Tetraspanin.	Si:ch211-132g1.7.	0.736
Ptgfrn	CD9	ENSLCAP00010043623	ENSLCAP00010004292	Si:ch211-132g1.7.	Tetraspanin.	0.736
Ptgfrn	LOC108875178	ENSLCAP00010043623	ENSLCAP00010020812	Si:ch211-132g1.7.	Tetraspanin.	0.736