(28 nodes) Regulation of muscle adaptation network (Lates calcarifer)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010013012	Uncharacterized protein. (788 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)
	Parp2	Poly [ADP-ribose] polymerase. (658 aa)
	Lmcd1	LIM and cysteine-rich domains 1. (280 aa)
	LOC108880704	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (440 aa)
	LOC108878145	Uncharacterized protein. (1738 aa)
	LOC108876348	SCP domain-containing protein; Belongs to the CRISP family. (415 aa)
	gsk3b	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (425 aa)
	rusc1	Uncharacterized protein. (1923 aa)
	errfi1	Inhibitor_Mig-6 domain-containing protein. (447 aa)
	mstn	TGF_BETA_2 domain-containing protein. (376 aa)
	il6st	Uncharacterized protein. (898 aa)
	LOC108897190	Uncharacterized protein. (275 aa)
	LOC108881923	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (438 aa)
	LOC108873031	Uncharacterized protein. (266 aa)
	TNNC1	Uncharacterized protein. (161 aa)
	ENSLCAP00010037250	Endothelin 1. (190 aa)
	Pde9a	Phosphodiesterase. (474 aa)
	tomm70	TPR_REGION domain-containing protein. (578 aa)
	myog	BHLH domain-containing protein. (258 aa)
	ENSLCAP00010024056	Tumor necrosis factor receptor superfamily, member 1a. (440 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1014 aa)
	LOC108886395	Phosphodiesterase. (519 aa)
	LOC108900474	Uncharacterized protein. (161 aa)
	ENSLCAP00010015855	GTF2I repeat domain containing 1. (808 aa)
	Tmem8c	Myomaker, myoblast fusion factor. (226 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010001596	LOC108896340	ENSLCAP00010001596	ENSLCAP00010011045	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
ENSLCAP00010001596	Parp2	ENSLCAP00010001596	ENSLCAP00010001180	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase.	0.607
ENSLCAP00010001596	SMAD4	ENSLCAP00010001596	ENSLCAP00010013760	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
ENSLCAP00010001596	parp1	ENSLCAP00010001596	ENSLCAP00010021233	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.628
ENSLCAP00010037250	parp1	ENSLCAP00010037250	ENSLCAP00010021233	Endothelin 1.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.424
LOC108896340	ENSLCAP00010001596	ENSLCAP00010011045	ENSLCAP00010001596	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC108896340	Parp2	ENSLCAP00010011045	ENSLCAP00010001180	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase.	0.607
LOC108896340	SMAD4	ENSLCAP00010011045	ENSLCAP00010013760	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
LOC108896340	parp1	ENSLCAP00010011045	ENSLCAP00010021233	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.628
LOC108900474	TNNC1	ENSLCAP00010017299	ENSLCAP00010041669	Uncharacterized protein.	Uncharacterized protein.	0.900
Parp2	ENSLCAP00010001596	ENSLCAP00010001180	ENSLCAP00010001596	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.607
Parp2	LOC108896340	ENSLCAP00010001180	ENSLCAP00010011045	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.607
Parp2	SMAD4	ENSLCAP00010001180	ENSLCAP00010013760	Poly [ADP-ribose] polymerase.	Mothers against decapentaplegic homolog.	0.607
Parp2	parp1	ENSLCAP00010001180	ENSLCAP00010021233	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.981
SMAD4	ENSLCAP00010001596	ENSLCAP00010013760	ENSLCAP00010001596	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
SMAD4	LOC108896340	ENSLCAP00010013760	ENSLCAP00010011045	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
SMAD4	Parp2	ENSLCAP00010013760	ENSLCAP00010001180	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase.	0.607
SMAD4	parp1	ENSLCAP00010013760	ENSLCAP00010021233	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.628
TNNC1	LOC108900474	ENSLCAP00010041669	ENSLCAP00010017299	Uncharacterized protein.	Uncharacterized protein.	0.900
Tmem8c	myog	ENSLCAP00010015274	ENSLCAP00010025654	Myomaker, myoblast fusion factor.	BHLH domain-containing protein.	0.747