63 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grn	Uncharacterized protein. (837 aa)
	pink1-2	Serine/threonine-protein kinase PINK1, mitochondrial-like. (575 aa)
	LOC108886742	J domain-containing protein. (214 aa)
	LOC108877339	Uncharacterized protein. (390 aa)
	ntf3	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family. (300 aa)
	ENSLCAP00010056253	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b. (1429 aa)
	LOC108887427	J domain-containing protein. (201 aa)
	adnp	Uncharacterized protein. (1070 aa)
	LOC108890897	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (412 aa)
	gfral	Uncharacterized protein. (437 aa)
	Rasa1	RAS p21 protein activator (GTPase activating protein) 1a. (1066 aa)
	ENSLCAP00010060249	Wolfram syndrome 1a (wolframin). (703 aa)
	ENSLCAP00010052122	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1. (142 aa)
	en1	Homeobox protein engrailed-like. (289 aa)
	Lgmn	Legumain. (425 aa)
	LOC108874357	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (463 aa)
	il6st	Uncharacterized protein. (898 aa)
	FOXQ1	Forkhead box Q1. (244 aa)
	ppt1	Uncharacterized protein. (303 aa)
	LOC108877714	BZIP domain-containing protein. (347 aa)
	LOC108877701	Uncharacterized protein. (299 aa)
	wfs1	Uncharacterized protein. (964 aa)
	Msh2	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (908 aa)
	Mecp2	Methyl CpG binding protein 2. (1030 aa)
	LOC108890509	J domain-containing protein. (221 aa)
	ppargc1a	RRM domain-containing protein. (951 aa)
	pink1	Protein kinase domain-containing protein. (575 aa)
	LOC108890483	CCAAT/enhancer-binding protein. (301 aa)
	XRCC2	X-ray repair cross complementing 2. (217 aa)
	Vps54	Vacuolar protein sorting 54 homolog (S. cerevisiae). (981 aa)
	map2k4	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (434 aa)
	LOC108875084	Uncharacterized protein. (395 aa)
	cln8	TLC domain-containing protein. (285 aa)
	ENSLCAP00010031904	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (459 aa)
	ENSLCAP00010031816	Granulin a. (787 aa)
	lig4	DNA ligase. (918 aa)
	ndnf	Uncharacterized protein. (571 aa)
	yju2	Uncharacterized protein. (344 aa)
	ENSLCAP00010030749	Uncharacterized protein. (199 aa)
	gclc	Uncharacterized protein. (633 aa)
	ENSLCAP00010028775	Nuclear receptor binding protein 2b. (475 aa)
	ENSLCAP00010027430	Uncharacterized protein. (1508 aa)
	ENSLCAP00010023595	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a. (223 aa)
	ENSLCAP00010021885	Apolipoprotein Eb. (263 aa)
	ENSLCAP00010020668	Kinesin family member 14; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (1183 aa)
	ENSLCAP00010020334	Forkhead box Q1a. (201 aa)
	gdnf	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake. (257 aa)
	ENSLCAP00010017630	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (327 aa)
	psenen	Uncharacterized protein. (144 aa)
	sncb	Beta-synuclein; Belongs to the synuclein family. (135 aa)
	LOC108882817	Uncharacterized protein. (747 aa)
	LOC108880779	Uncharacterized protein. (146 aa)
	bax	Uncharacterized protein. (192 aa)
	LOC108882650	Ig-like domain-containing protein. (265 aa)
	ENSLCAP00010011334	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (132 aa)
	LOC108884936	J domain-containing protein. (197 aa)
	HDGF	Heparin binding growth factor. (223 aa)
	LOC108873765	G_PROTEIN_RECEP_F1_2 domain-containing protein. (440 aa)
	LOC108884036	Ig-like domain-containing protein. (212 aa)
	LOC108902953	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (367 aa)
	Unc5b	Unc-5 netrin receptor B. (943 aa)
	ENSLCAP00010001250	Nuclear factor of activated T cells 4. (464 aa)
	Alkbh1	AlkB homolog 1, histone H2A dioxygenase. (364 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010011334	gdnf	ENSLCAP00010011334	ENSLCAP00010018670	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.602
ENSLCAP00010011334	ntf3	ENSLCAP00010011334	ENSLCAP00010055828	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	Neurotrophin-3; Seems to promote the survival of visceral and proprioceptive sensory neurons; Belongs to the NGF-beta family.	0.465
ENSLCAP00010017630	LOC108890483	ENSLCAP00010017630	ENSLCAP00010035287	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	CCAAT/enhancer-binding protein.	0.519
ENSLCAP00010017630	LOC108890897	ENSLCAP00010017630	ENSLCAP00010057957	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.401
ENSLCAP00010017630	gdnf	ENSLCAP00010017630	ENSLCAP00010018670	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.530
ENSLCAP00010017630	map2k4	ENSLCAP00010017630	ENSLCAP00010034084	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.401
ENSLCAP00010023595	yju2	ENSLCAP00010023595	ENSLCAP00010030894	DnaJ (Hsp40) homolog, subfamily C, member 5 gamma a.	Uncharacterized protein.	0.455
ENSLCAP00010031904	pink1	ENSLCAP00010031904	ENSLCAP00010035987	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Protein kinase domain-containing protein.	0.933
ENSLCAP00010031904	pink1-2	ENSLCAP00010031904	ENSLCAP00010052377	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Serine/threonine-protein kinase PINK1, mitochondrial-like.	0.933
ENSLCAP00010060249	wfs1	ENSLCAP00010060249	ENSLCAP00010039247	Wolfram syndrome 1a (wolframin).	Uncharacterized protein.	0.902
LOC108874357	pink1	ENSLCAP00010048920	ENSLCAP00010035987	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Protein kinase domain-containing protein.	0.993
LOC108874357	pink1-2	ENSLCAP00010048920	ENSLCAP00010052377	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Serine/threonine-protein kinase PINK1, mitochondrial-like.	0.933
LOC108877714	LOC108890483	ENSLCAP00010045656	ENSLCAP00010035287	BZIP domain-containing protein.	CCAAT/enhancer-binding protein.	0.519
LOC108877714	LOC108890897	ENSLCAP00010045656	ENSLCAP00010057957	BZIP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.401
LOC108877714	gdnf	ENSLCAP00010045656	ENSLCAP00010018670	BZIP domain-containing protein.	Glial cell line-derived neurotrophic factor; Neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high- affinity dopamine uptake.	0.530
LOC108877714	map2k4	ENSLCAP00010045656	ENSLCAP00010034084	BZIP domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.401
LOC108884936	yju2	ENSLCAP00010010502	ENSLCAP00010030894	J domain-containing protein.	Uncharacterized protein.	0.455
LOC108886742	yju2	ENSLCAP00010053465	ENSLCAP00010030894	J domain-containing protein.	Uncharacterized protein.	0.455
LOC108887427	yju2	ENSLCAP00010056978	ENSLCAP00010030894	J domain-containing protein.	Uncharacterized protein.	0.455
LOC108890483	ENSLCAP00010017630	ENSLCAP00010035287	ENSLCAP00010017630	CCAAT/enhancer-binding protein.	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.	0.519