17 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108891182	Autophagy protein 5; Involved in autophagic vesicle formation. (314 aa)
	LOC108890732	Uncharacterized protein. (231 aa)
	stx17	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	rab32	Uncharacterized protein. (278 aa)
	tmem41b	Uncharacterized protein. (283 aa)
	mboat7	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family. (475 aa)
	ENSLCAP00010025602	Autophagy protein 5; Involved in autophagic vesicle formation. (178 aa)
	LOC108890662	Uncharacterized protein. (692 aa)
	ZFYVE1	Uncharacterized protein. (786 aa)
	ENSLCAP00010041949	Zinc finger, FYVE domain containing 1. (786 aa)
	LOC108902018	Uncharacterized protein. (218 aa)
	LOC108893212	Uncharacterized protein. (207 aa)
	RAB38	Uncharacterized protein. (212 aa)
	ENSLCAP00010047786	Uncharacterized protein. (216 aa)
	LOC108877071	Uncharacterized protein. (191 aa)
	LOC108893277	Uncharacterized protein. (218 aa)
	atg14	Galectin domain-containing protein. (555 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010025602	atg14	ENSLCAP00010025602	ENSLCAP00010059166	Autophagy protein 5; Involved in autophagic vesicle formation.	Galectin domain-containing protein.	0.817
ENSLCAP00010025602	stx17	ENSLCAP00010025602	ENSLCAP00010012155	Autophagy protein 5; Involved in autophagic vesicle formation.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.579
ENSLCAP00010041949	LOC108890662	ENSLCAP00010041949	ENSLCAP00010027729	Zinc finger, FYVE domain containing 1.	Uncharacterized protein.	0.902
ENSLCAP00010041949	ZFYVE1	ENSLCAP00010041949	ENSLCAP00010041434	Zinc finger, FYVE domain containing 1.	Uncharacterized protein.	0.901
LOC108890662	ENSLCAP00010041949	ENSLCAP00010027729	ENSLCAP00010041949	Uncharacterized protein.	Zinc finger, FYVE domain containing 1.	0.902
LOC108890662	ZFYVE1	ENSLCAP00010027729	ENSLCAP00010041434	Uncharacterized protein.	Uncharacterized protein.	0.902
LOC108891182	atg14	ENSLCAP00010009358	ENSLCAP00010059166	Autophagy protein 5; Involved in autophagic vesicle formation.	Galectin domain-containing protein.	0.817
LOC108891182	stx17	ENSLCAP00010009358	ENSLCAP00010012155	Autophagy protein 5; Involved in autophagic vesicle formation.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.579
ZFYVE1	ENSLCAP00010041949	ENSLCAP00010041434	ENSLCAP00010041949	Uncharacterized protein.	Zinc finger, FYVE domain containing 1.	0.901
ZFYVE1	LOC108890662	ENSLCAP00010041434	ENSLCAP00010027729	Uncharacterized protein.	Uncharacterized protein.	0.902
atg14	ENSLCAP00010025602	ENSLCAP00010059166	ENSLCAP00010025602	Galectin domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.817
atg14	LOC108891182	ENSLCAP00010059166	ENSLCAP00010009358	Galectin domain-containing protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.817
atg14	stx17	ENSLCAP00010059166	ENSLCAP00010012155	Galectin domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.976
mboat7	tmem41b	ENSLCAP00010019365	ENSLCAP00010019310	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	Uncharacterized protein.	0.400
stx17	ENSLCAP00010025602	ENSLCAP00010012155	ENSLCAP00010025602	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.579
stx17	LOC108891182	ENSLCAP00010012155	ENSLCAP00010009358	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.579
stx17	atg14	ENSLCAP00010012155	ENSLCAP00010059166	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Galectin domain-containing protein.	0.976
tmem41b	mboat7	ENSLCAP00010019310	ENSLCAP00010019365	Uncharacterized protein.	Uncharacterized protein; Belongs to the membrane-bound acyltransferase family.	0.400