(63 nodes) Regulation of embryonic development network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108889295	UDG domain-containing protein. (451 aa)
	ENSLCAP00010060583	RNA binding motif protein 19. (943 aa)
	LOC108897169	Uncharacterized protein. (173 aa)
	LOC108894863	Peptidase S72 domain-containing protein. (907 aa)
	ENSLCAP00010056969	Laminin, alpha 5. (1650 aa)
	ccsap	Uncharacterized protein. (293 aa)
	LOC108892184	SGF29 C-terminal domain-containing protein. (290 aa)
	LOC108890802	Homeobox domain-containing protein. (194 aa)
	ENSLCAP00010002305	PH domain-containing protein. (101 aa)
	ENSLCAP00010002339	FHA domain-containing protein. (184 aa)
	LOC108899427	Ubiquitin-like domain-containing protein. (1220 aa)
	ENSLCAP00010003783	Laminin, alpha 4. (1766 aa)
	LAMA2	Laminin subunit alpha 2. (1966 aa)
	Phldb3	PH domain-containing protein. (358 aa)
	mbip	Uncharacterized protein. (335 aa)
	ENSLCAP00010004274	Uncharacterized protein. (639 aa)
	poglut1	CAP10 domain-containing protein. (388 aa)
	dhx36	Uncharacterized protein. (1079 aa)
	LOC108902953	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (367 aa)
	lhx1	Uncharacterized protein. (407 aa)
	ino80e	Uncharacterized protein. (342 aa)
	rack1	WD_REPEATS_REGION domain-containing protein. (331 aa)
	ENSLCAP00010011957	Homeobox domain-containing protein. (103 aa)
	rab14	Uncharacterized protein. (215 aa)
	LOC108879160	Uncharacterized protein. (1060 aa)
	ENSLCAP00010013550	Pleckstrin homology-like domain, family B, member 1b. (1573 aa)
	ENSLCAP00010016757	PH domain-containing protein. (101 aa)
	dr1	CBFD_NFYB_HMF domain-containing protein. (176 aa)
	nfrkb	NFRKB_winged domain-containing protein. (1276 aa)
	LOC108896377	Ubiquitin-like domain-containing protein. (1208 aa)
	ENSLCAP00010018377	Pleckstrin homology-like domain, family B, member 2b. (1388 aa)
	ENSLCAP00010020016	SAGA complex associated factor 29. (425 aa)
	WNT2B	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (391 aa)
	LAMA3	Laminin subunit alpha 3. (2779 aa)
	ENSLCAP00010023358	Pleckstrin homology-like domain family B member 2. (101 aa)
	LOC108900154	Endo/exonuclease/phosphatase domain-containing protein. (394 aa)
	ENSLCAP00010026194	Transcriptional adapter. (412 aa)
	noct	Endo/exonuclease/phosphatase domain-containing protein. (460 aa)
	ENSLCAP00010028564	Uncharacterized protein. (1601 aa)
	wdpcp	Uncharacterized protein. (755 aa)
	ENSLCAP00010055835	Thymine DNA glycosylase, tandem duplicate 2. (300 aa)
	ENSLCAP00010038070	Cactin. (715 aa)
	Sfrp2	Secreted frizzled-related protein 2. (284 aa)
	ENSLCAP00010042308	INO80 complex subunit. (1413 aa)
	mcrs1	FHA domain-containing protein. (466 aa)
	LOC108886611	Uncharacterized protein. (389 aa)
	Uchl5	Ubiquitin carboxyl-terminal hydrolase. (349 aa)
	LYPD6	Uncharacterized protein. (173 aa)
	ENSLCAP00010049008	Ubiquitin-like domain-containing protein. (1124 aa)
	tfpt	Uncharacterized protein. (199 aa)
	ENSLCAP00010049566	Homeobox domain-containing protein. (107 aa)
	Racgap1	Rac GTPase activating protein 1. (662 aa)
	kat14	N-acetyltransferase domain-containing protein. (793 aa)
	LOC108889537	Peptidase S72 domain-containing protein. (910 aa)
	LOC108891536	Uncharacterized protein. (639 aa)
	yeats2	Uncharacterized protein. (1444 aa)
	nfe2l2	BZIP domain-containing protein. (612 aa)
	ENSLCAP00010035172	Laminin, alpha 1. (2542 aa)
	LOC108902118	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (384 aa)
	Rspo3	R-spondin 3. (307 aa)
	trip12	Uncharacterized protein. (2062 aa)
	zzz3	Uncharacterized protein. (983 aa)
	LOC108875314	Uncharacterized protein. (215 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010002305	ENSLCAP00010002339	ENSLCAP00010002305	ENSLCAP00010002339	PH domain-containing protein.	FHA domain-containing protein.	0.900
ENSLCAP00010002339	ENSLCAP00010002305	ENSLCAP00010002339	ENSLCAP00010002305	FHA domain-containing protein.	PH domain-containing protein.	0.900
ENSLCAP00010002339	ENSLCAP00010016757	ENSLCAP00010002339	ENSLCAP00010016757	FHA domain-containing protein.	PH domain-containing protein.	0.899
ENSLCAP00010002339	ENSLCAP00010023358	ENSLCAP00010002339	ENSLCAP00010023358	FHA domain-containing protein.	Pleckstrin homology-like domain family B member 2.	0.900
ENSLCAP00010002339	Phldb3	ENSLCAP00010002339	ENSLCAP00010004186	FHA domain-containing protein.	PH domain-containing protein.	0.899
ENSLCAP00010016757	ENSLCAP00010002339	ENSLCAP00010016757	ENSLCAP00010002339	PH domain-containing protein.	FHA domain-containing protein.	0.899
ENSLCAP00010020016	ENSLCAP00010026194	ENSLCAP00010020016	ENSLCAP00010026194	SAGA complex associated factor 29.	Transcriptional adapter.	0.971
ENSLCAP00010020016	dr1	ENSLCAP00010020016	ENSLCAP00010016987	SAGA complex associated factor 29.	CBFD_NFYB_HMF domain-containing protein.	0.797
ENSLCAP00010020016	kat14	ENSLCAP00010020016	ENSLCAP00010030534	SAGA complex associated factor 29.	N-acetyltransferase domain-containing protein.	0.944
ENSLCAP00010020016	mbip	ENSLCAP00010020016	ENSLCAP00010004247	SAGA complex associated factor 29.	Uncharacterized protein.	0.786
ENSLCAP00010020016	yeats2	ENSLCAP00010020016	ENSLCAP00010033586	SAGA complex associated factor 29.	Uncharacterized protein.	0.913
ENSLCAP00010020016	zzz3	ENSLCAP00010020016	ENSLCAP00010054933	SAGA complex associated factor 29.	Uncharacterized protein.	0.940
ENSLCAP00010023358	ENSLCAP00010002339	ENSLCAP00010023358	ENSLCAP00010002339	Pleckstrin homology-like domain family B member 2.	FHA domain-containing protein.	0.900
ENSLCAP00010026194	ENSLCAP00010020016	ENSLCAP00010026194	ENSLCAP00010020016	Transcriptional adapter.	SAGA complex associated factor 29.	0.971
ENSLCAP00010026194	LOC108892184	ENSLCAP00010026194	ENSLCAP00010000211	Transcriptional adapter.	SGF29 C-terminal domain-containing protein.	0.971
ENSLCAP00010026194	LOC108900154	ENSLCAP00010026194	ENSLCAP00010023969	Transcriptional adapter.	Endo/exonuclease/phosphatase domain-containing protein.	0.497
ENSLCAP00010026194	dr1	ENSLCAP00010026194	ENSLCAP00010016987	Transcriptional adapter.	CBFD_NFYB_HMF domain-containing protein.	0.928
ENSLCAP00010026194	kat14	ENSLCAP00010026194	ENSLCAP00010030534	Transcriptional adapter.	N-acetyltransferase domain-containing protein.	0.925
ENSLCAP00010026194	mbip	ENSLCAP00010026194	ENSLCAP00010004247	Transcriptional adapter.	Uncharacterized protein.	0.902
ENSLCAP00010026194	noct	ENSLCAP00010026194	ENSLCAP00010028530	Transcriptional adapter.	Endo/exonuclease/phosphatase domain-containing protein.	0.497