98 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108893693	Uncharacterized protein. (888 aa)
	LOC108873030	Uncharacterized protein. (310 aa)
	gdf15	TGF_BETA_2 domain-containing protein. (403 aa)
	ENSLCAP00010046752	Sema domain-containing protein; Belongs to the semaphorin family. (586 aa)
	LOC108880540	Uncharacterized protein. (316 aa)
	ENSLCAP00010047527	TGFb_propeptide domain-containing protein. (130 aa)
	Spg20	Spartin a. (632 aa)
	LOC108874413	Uncharacterized protein. (137 aa)
	LOC108881923	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (438 aa)
	LOC108897191	Uncharacterized protein. (270 aa)
	dip2a	DMAP-interaction domain-containing protein. (1603 aa)
	Lgmn	Legumain. (425 aa)
	LOC108876974	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	ENSLCAP00010051333	Unc-51 like autophagy activating kinase 1a. (797 aa)
	fxn	Uncharacterized protein. (215 aa)
	sav1	Uncharacterized protein. (424 aa)
	LOC108896365	Sema domain-containing protein; Belongs to the semaphorin family. (820 aa)
	ENSLCAP00010023161	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (725 aa)
	ENSLCAP00010020036	Si:ch211-129c21.1; Belongs to the semaphorin family. (737 aa)
	PLAC8-2	Placenta-specific gene 8 protein-like. (104 aa)
	LOC108889982	Uncharacterized protein; Belongs to the semaphorin family. (790 aa)
	PLAC8	Placenta-specific gene 8 protein-like. (104 aa)
	slc6a4	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (674 aa)
	ENSLCAP00010014590	CCDC144C domain-containing protein. (1218 aa)
	ENSLCAP00010013178	Sema domain-containing protein; Belongs to the semaphorin family. (601 aa)
	Adrb2	Adrenoceptor beta 2, surface a. (388 aa)
	LOC108875388	Sema domain-containing protein; Belongs to the semaphorin family. (836 aa)
	ulk2	Protein kinase domain-containing protein. (1040 aa)
	Sema4d	Uncharacterized protein; Belongs to the semaphorin family. (875 aa)
	ryk	Uncharacterized protein. (631 aa)
	ENSLCAP00010023779	Disco-interacting protein 2 homolog Ba. (1586 aa)
	sema3a	Uncharacterized protein; Belongs to the semaphorin family. (777 aa)
	sema3e	Uncharacterized protein; Belongs to the semaphorin family. (789 aa)
	LOC108879275	Protein kinase domain-containing protein. (1026 aa)
	sema7a	Uncharacterized protein; Belongs to the semaphorin family. (655 aa)
	LOC108895221	Protein kinase domain-containing protein. (260 aa)
	ENSLCAP00010024920	Uncharacterized protein. (425 aa)
	ENSLCAP00010027390	Uncharacterized protein. (1625 aa)
	cdk5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (292 aa)
	LOC108883187	Sema domain-containing protein; Belongs to the semaphorin family. (1093 aa)
	LOC108895471	Uncharacterized protein. (124 aa)
	LOC108883171	Sema domain-containing protein; Belongs to the semaphorin family. (639 aa)
	sema6d	Sema domain-containing protein; Belongs to the semaphorin family. (1125 aa)
	ENSLCAP00010009306	Sema domain-containing protein; Belongs to the semaphorin family. (894 aa)
	wnt3a	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (369 aa)
	LOC108879659	Uncharacterized protein; Belongs to the semaphorin family. (864 aa)
	adrb1	G_PROTEIN_RECEP_F1_2 domain-containing protein. (397 aa)
	LOC108873982	Uncharacterized protein. (104 aa)
	epha4	Uncharacterized protein. (989 aa)
	Sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (808 aa)
	sema3c	Uncharacterized protein; Belongs to the semaphorin family. (766 aa)
	ENSLCAP00010005814	Uncharacterized protein; Belongs to the semaphorin family. (825 aa)
	sema3g	Uncharacterized protein; Belongs to the semaphorin family. (788 aa)
	ENSLCAP00010004830	Sema domain-containing protein. (202 aa)
	ENSLCAP00010004824	Si:dkey-49n23.1; Belongs to the semaphorin family. (360 aa)
	DIP2C	DMAP-interaction domain-containing protein. (1623 aa)
	LOC108880704	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (440 aa)
	sema6b	Sema domain-containing protein; Belongs to the semaphorin family. (882 aa)
	LOC108898929	TGF_BETA_2 domain-containing protein. (389 aa)
	ENSLCAP00010055937	G_PROTEIN_RECEP_F1_2 domain-containing protein. (402 aa)
	ENSLCAP00010056061	annotation not available (316 aa)
	ENSLCAP00010056642	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family. (435 aa)
	ifrd1	Uncharacterized protein. (432 aa)
	LOC108890543	Uncharacterized protein. (201 aa)
	LOC108885057	DMAP-interaction domain-containing protein. (1600 aa)
	gsk3b	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (425 aa)
	LOC108876348	SCP domain-containing protein; Belongs to the CRISP family. (415 aa)
	ENSLCAP00010058761	Sema domain-containing protein; Belongs to the semaphorin family. (501 aa)
	LOC108878718	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (443 aa)
	LOC108878194	Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (602 aa)
	ENSLCAP00010059343	Uncharacterized protein. (277 aa)
	ENSLCAP00010059518	Interferon-related developmental regulator 2. (430 aa)
	LOC108882563	Uncharacterized protein; Belongs to the semaphorin family. (768 aa)
	ENSLCAP00010027793	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (334 aa)
	ENSLCAP00010028429	Uncharacterized protein; Belongs to the semaphorin family. (874 aa)
	ENSLCAP00010028496	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (718 aa)
	ENSLCAP00010028749	Sema domain-containing protein; Belongs to the semaphorin family. (773 aa)
	LOC108876027	MIT domain-containing protein. (598 aa)
	tomm70	TPR_REGION domain-containing protein. (578 aa)
	LOC108881836	Sema domain-containing protein. (1078 aa)
	nog	Noggin; Belongs to the noggin family. (225 aa)
	ENSLCAP00010033367	Apolipoprotein Da, duplicate 2; Belongs to the calycin superfamily. Lipocalin family. (191 aa)
	LOC108884156	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (190 aa)
	ENSLCAP00010035973	Uncharacterized protein. (400 aa)
	ENSLCAP00010037062	Disco-interacting protein 2 homolog Bb. (1600 aa)
	ENSLCAP00010038131	Semaphorin 4e; Belongs to the semaphorin family. (756 aa)
	LOC108883616	Sema domain-containing protein; Belongs to the semaphorin family. (899 aa)
	ENSLCAP00010038454	Sema domain-containing protein. (1006 aa)
	SEMA4F	Ssemaphorin 4F; Belongs to the semaphorin family. (666 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (868 aa)
	ENSLCAP00010039910	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (750 aa)
	LOC108883624	Uncharacterized protein. (1165 aa)
	dusp10	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (472 aa)
	ENSLCAP00010041540	Vestigial-like family member 4a. (259 aa)
	LOC108892896	Sema domain-containing protein. (1092 aa)
	ENSLCAP00010042220	Uncharacterized protein. (266 aa)
	ENSLCAP00010042286	Uncharacterized protein. (125 aa)
	vgll4	Uncharacterized protein. (319 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Adrb2	LOC108878718	ENSLCAP00010012893	ENSLCAP00010059253	Adrenoceptor beta 2, surface a.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.612
Adrb2	adrb1	ENSLCAP00010012893	ENSLCAP00010008854	Adrenoceptor beta 2, surface a.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.413
ENSLCAP00010005814	cdk5	ENSLCAP00010005814	ENSLCAP00010010142	Uncharacterized protein; Belongs to the semaphorin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
ENSLCAP00010009306	cdk5	ENSLCAP00010009306	ENSLCAP00010010142	Sema domain-containing protein; Belongs to the semaphorin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
ENSLCAP00010013178	cdk5	ENSLCAP00010013178	ENSLCAP00010010142	Sema domain-containing protein; Belongs to the semaphorin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
ENSLCAP00010024920	LOC108895221	ENSLCAP00010024920	ENSLCAP00010024912	Uncharacterized protein.	Protein kinase domain-containing protein.	0.472
ENSLCAP00010027793	LOC108880704	ENSLCAP00010027793	ENSLCAP00010000186	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.539
ENSLCAP00010027793	LOC108881923	ENSLCAP00010027793	ENSLCAP00010047789	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.539
ENSLCAP00010027793	gsk3b	ENSLCAP00010027793	ENSLCAP00010058427	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.539
ENSLCAP00010027793	ryk	ENSLCAP00010027793	ENSLCAP00010023308	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.	Uncharacterized protein.	0.768
ENSLCAP00010028429	cdk5	ENSLCAP00010028429	ENSLCAP00010010142	Uncharacterized protein; Belongs to the semaphorin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
ENSLCAP00010038454	cdk5	ENSLCAP00010038454	ENSLCAP00010010142	Sema domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
ENSLCAP00010041540	sav1	ENSLCAP00010041540	ENSLCAP00010052690	Vestigial-like family member 4a.	Uncharacterized protein.	0.422
ENSLCAP00010055937	LOC108878718	ENSLCAP00010055937	ENSLCAP00010059253	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.614
ENSLCAP00010055937	adrb1	ENSLCAP00010055937	ENSLCAP00010008854	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.414
ENSLCAP00010056642	cdk5	ENSLCAP00010056642	ENSLCAP00010010142	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.433
LOC108876027	Spg20	ENSLCAP00010030740	ENSLCAP00010047548	MIT domain-containing protein.	Spartin a.	0.904
LOC108878718	Adrb2	ENSLCAP00010059253	ENSLCAP00010012893	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Adrenoceptor beta 2, surface a.	0.612
LOC108878718	ENSLCAP00010055937	ENSLCAP00010059253	ENSLCAP00010055937	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.614
LOC108878718	adrb1	ENSLCAP00010059253	ENSLCAP00010008854	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.605