19 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010032689	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1432 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (465 aa)
	LOC108889537	Peptidase S72 domain-containing protein. (910 aa)
	LOC108876833	Uncharacterized protein. (428 aa)
	flcn	UDENN FLCN/SMCR8-type domain-containing protein. (563 aa)
	Sirt1	Deacetylase sirtuin-type domain-containing protein. (705 aa)
	ENSLCAP00010012128	TSC complex subunit 2. (1765 aa)
	sh2b3	SH2 domain-containing protein. (752 aa)
	ENSLCAP00010006546	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1454 aa)
	ENSLCAP00010003080	OTU deubiquitinase 3. (334 aa)
	ENSLCAP00010000828	PH domain-containing protein. (214 aa)
	mul1	RING-type domain-containing protein. (352 aa)
	LOC108898929	TGF_BETA_2 domain-containing protein. (389 aa)
	LOC108894863	Peptidase S72 domain-containing protein. (907 aa)
	ENSLCAP00010047527	TGFb_propeptide domain-containing protein. (130 aa)
	ENSLCAP00010039550	Pleckstrin homology-like domain, family A, member 3. (124 aa)
	BANK1	DBB domain-containing protein. (597 aa)
	Cib1	Calcium and integrin binding 1 (calmyrin). (183 aa)
	ddit3	Uncharacterized protein. (312 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010012128	Sirt1	ENSLCAP00010012128	ENSLCAP00010015909	TSC complex subunit 2.	Deacetylase sirtuin-type domain-containing protein.	0.606
ENSLCAP00010012128	flcn	ENSLCAP00010012128	ENSLCAP00010019503	TSC complex subunit 2.	UDENN FLCN/SMCR8-type domain-containing protein.	0.580
LOC108889537	LOC108894863	ENSLCAP00010031421	ENSLCAP00010057017	Peptidase S72 domain-containing protein.	Peptidase S72 domain-containing protein.	0.901
LOC108894863	LOC108889537	ENSLCAP00010057017	ENSLCAP00010031421	Peptidase S72 domain-containing protein.	Peptidase S72 domain-containing protein.	0.901
Sirt1	ENSLCAP00010012128	ENSLCAP00010015909	ENSLCAP00010012128	Deacetylase sirtuin-type domain-containing protein.	TSC complex subunit 2.	0.606
flcn	ENSLCAP00010012128	ENSLCAP00010019503	ENSLCAP00010012128	UDENN FLCN/SMCR8-type domain-containing protein.	TSC complex subunit 2.	0.580