62 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108877714	BZIP domain-containing protein. (347 aa)
	ENSLCAP00010045556	Bone morphogenetic protein 7a. (415 aa)
	inha	Inhibin alpha chain; Inhibins and activins inhibit and activate, respectively, the secretion of follitropin by the pituitary gland. Inhibins/activins are involved in regulating a number of diverse functions such as hypothalamic and pituitary hormone secretion, gonadal hormone secretion, germ cell development and maturation, erythroid differentiation, insulin secretion, nerve cell survival, embryonic axial development or bone growth, depending on their subunit composition; Belongs to the TGF-beta family. (349 aa)
	ENSLCAP00010043543	Inhibin subunit beta Aa. (398 aa)
	nodal	TGF_BETA_2 domain-containing protein. (398 aa)
	LOC108872574	Transforming growth factor beta; Belongs to the TGF-beta family. (420 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (405 aa)
	bmp7	TGF_BETA_2 domain-containing protein. (427 aa)
	Smad1	Mothers against decapentaplegic homolog. (462 aa)
	LOC108873145	Myostatin-2. (359 aa)
	ENSLCAP00010040901	Bone morphogenetic protein 16. (394 aa)
	ENSLCAP00010037582	TGFb_propeptide domain-containing protein. (251 aa)
	LOC108887630	TGF_BETA_2 domain-containing protein. (400 aa)
	bmp4	TGF_BETA_2 domain-containing protein. (457 aa)
	bmp3	Bone morphogenetic protein 3; Belongs to the TGF-beta family. (464 aa)
	INHBC	Inhibin subunit beta C. (368 aa)
	LOC108887645	TGF_BETA_2 domain-containing protein. (453 aa)
	bmp10	TGF_BETA_2 domain-containing protein. (491 aa)
	LOC108878489	Mothers against decapentaplegic homolog. (467 aa)
	ENSLCAP00010032689	Membrane associated guanylate kinase, WW and PDZ domain containing 2b. (1432 aa)
	ENSLCAP00010028304	Jade family PHD finger 2. (783 aa)
	smad3	Mothers against decapentaplegic homolog. (449 aa)
	smad6	Mothers against decapentaplegic homolog. (491 aa)
	ENSLCAP00010025014	Growth differentiation factor 3. (345 aa)
	ENSLCAP00010020072	RRM domain-containing protein. (292 aa)
	Bmp6	Bone morphogenetic protein 6. (242 aa)
	ENSLCAP00010017630	Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family. (327 aa)
	TGFB3	Transforming growth factor beta; Belongs to the TGF-beta family. (408 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (806 aa)
	LOC108882018	Uncharacterized protein. (403 aa)
	LOC108882017	Uncharacterized protein. (346 aa)
	slc33a1	Uncharacterized protein. (548 aa)
	inhba	TGF_BETA_2 domain-containing protein. (400 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)
	LOC108888971	TGF_BETA_2 domain-containing protein. (463 aa)
	smad7	Mothers against decapentaplegic homolog. (376 aa)
	LOC108895789	Left-right determination factor. (359 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	ENSLCAP00010007880	TGF_BETA_2 domain-containing protein. (470 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (444 aa)
	ENSLCAP00010006546	Membrane associated guanylate kinase, WW and PDZ domain containing 2a. (1454 aa)
	ENSLCAP00010005369	TGF_BETA_2 domain-containing protein. (379 aa)
	ENSLCAP00010004949	Growth differentiation factor 5. (447 aa)
	ENSLCAP00010002465	Nodal-related 1. (176 aa)
	LOC108887879	Mothers against decapentaplegic homolog. (506 aa)
	LOC108887878	Mothers against decapentaplegic homolog. (452 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)
	ENSLCAP00010001523	V-ski avian sarcoma viral oncogene homolog a. (720 aa)
	Bmp5	Bone morphogenetic protein 5. (460 aa)
	LOC108886018	Mothers against decapentaplegic homolog. (474 aa)
	LOC108878075	TGF_BETA_2 domain-containing protein. (414 aa)
	LOC108898929	TGF_BETA_2 domain-containing protein. (389 aa)
	LOC108878855	Mothers against decapentaplegic homolog. (471 aa)
	smad9	Mothers against decapentaplegic homolog. (469 aa)
	bmp15	TGF_BETA_2 domain-containing protein. (432 aa)
	ENSLCAP00010052122	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1. (142 aa)
	mstn	TGF_BETA_2 domain-containing protein. (376 aa)
	ENSLCAP00010048218	Growth differentiation factor 10b. (270 aa)
	ENSLCAP00010048214	Growth differentiation factor 2. (403 aa)
	Bmp8a	Bone morphogenetic protein 8a. (443 aa)
	ENSLCAP00010047527	TGFb_propeptide domain-containing protein. (130 aa)
	gdf15	TGF_BETA_2 domain-containing protein. (403 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bmp5	ENSLCAP00010040901	ENSLCAP00010059699	ENSLCAP00010040901	Bone morphogenetic protein 5.	Bone morphogenetic protein 16.	0.581
Bmp5	LOC108878855	ENSLCAP00010059699	ENSLCAP00010054256	Bone morphogenetic protein 5.	Mothers against decapentaplegic homolog.	0.444
Bmp5	bmp4	ENSLCAP00010059699	ENSLCAP00010036312	Bone morphogenetic protein 5.	TGF_BETA_2 domain-containing protein.	0.599
Bmp6	ENSLCAP00010037582	ENSLCAP00010018630	ENSLCAP00010037582	Bone morphogenetic protein 6.	TGFb_propeptide domain-containing protein.	0.879
Bmp6	ENSLCAP00010040901	ENSLCAP00010018630	ENSLCAP00010040901	Bone morphogenetic protein 6.	Bone morphogenetic protein 16.	0.599
Bmp6	LOC108878855	ENSLCAP00010018630	ENSLCAP00010054256	Bone morphogenetic protein 6.	Mothers against decapentaplegic homolog.	0.431
Bmp6	bmp4	ENSLCAP00010018630	ENSLCAP00010036312	Bone morphogenetic protein 6.	TGF_BETA_2 domain-containing protein.	0.596
Bmp6	smad9	ENSLCAP00010018630	ENSLCAP00010052953	Bone morphogenetic protein 6.	Mothers against decapentaplegic homolog.	0.449
ENSLCAP00010001523	ENSLCAP00010001596	ENSLCAP00010001523	ENSLCAP00010001596	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	LOC108878489	ENSLCAP00010001523	ENSLCAP00010032926	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108878855	ENSLCAP00010001523	ENSLCAP00010054256	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.730
ENSLCAP00010001523	LOC108886018	ENSLCAP00010001523	ENSLCAP00010060462	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108887878	ENSLCAP00010001523	ENSLCAP00010002040	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	LOC108887879	ENSLCAP00010001523	ENSLCAP00010002054	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.453
ENSLCAP00010001523	LOC108896340	ENSLCAP00010001523	ENSLCAP00010011045	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	SMAD4	ENSLCAP00010001523	ENSLCAP00010013760	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.922
ENSLCAP00010001523	Smad1	ENSLCAP00010001523	ENSLCAP00010041718	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.730
ENSLCAP00010001523	smad3	ENSLCAP00010001523	ENSLCAP00010026768	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.871
ENSLCAP00010001523	smad6	ENSLCAP00010001523	ENSLCAP00010026438	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.453
ENSLCAP00010001523	smad7	ENSLCAP00010001523	ENSLCAP00010011180	V-ski avian sarcoma viral oncogene homolog a.	Mothers against decapentaplegic homolog.	0.453