(11 nodes) Negative regulation of necroptotic process network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MUTYH	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (503 aa)
	ENSLCAP00010008403	Uncharacterized protein; Belongs to the peptidase C14A family. (480 aa)
	ENSLCAP00010013860	Si:dkey-181m9.8. (448 aa)
	LOC108880505	Uncharacterized protein. (195 aa)
	adprhl2	Uncharacterized protein. (390 aa)
	LOC108896760	Uncharacterized protein. (1121 aa)
	ENSLCAP00010034930	RanBP-type and C3HC4-type zinc finger containing 1. (468 aa)
	ENSLCAP00010059112	Caspase 8, apoptosis-related cysteine peptidase, like 2; Belongs to the peptidase C14A family. (647 aa)
	ENSLCAP00010042813	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (504 aa)
	ENSLCAP00010053450	RING-type domain-containing protein. (609 aa)
	ENSLCAP00010058335	Uncharacterized protein. (341 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010008403	LOC108880505	ENSLCAP00010008403	ENSLCAP00010018598	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.972
ENSLCAP00010013860	ENSLCAP00010034930	ENSLCAP00010013860	ENSLCAP00010034930	Si:dkey-181m9.8.	RanBP-type and C3HC4-type zinc finger containing 1.	0.885
ENSLCAP00010013860	ENSLCAP00010053450	ENSLCAP00010013860	ENSLCAP00010053450	Si:dkey-181m9.8.	RING-type domain-containing protein.	0.401
ENSLCAP00010034930	ENSLCAP00010013860	ENSLCAP00010034930	ENSLCAP00010013860	RanBP-type and C3HC4-type zinc finger containing 1.	Si:dkey-181m9.8.	0.885
ENSLCAP00010034930	ENSLCAP00010053450	ENSLCAP00010034930	ENSLCAP00010053450	RanBP-type and C3HC4-type zinc finger containing 1.	RING-type domain-containing protein.	0.885
ENSLCAP00010034930	ENSLCAP00010058335	ENSLCAP00010034930	ENSLCAP00010058335	RanBP-type and C3HC4-type zinc finger containing 1.	Uncharacterized protein.	0.885
ENSLCAP00010034930	LOC108896760	ENSLCAP00010034930	ENSLCAP00010029572	RanBP-type and C3HC4-type zinc finger containing 1.	Uncharacterized protein.	0.885
ENSLCAP00010053450	ENSLCAP00010013860	ENSLCAP00010053450	ENSLCAP00010013860	RING-type domain-containing protein.	Si:dkey-181m9.8.	0.401
ENSLCAP00010053450	ENSLCAP00010034930	ENSLCAP00010053450	ENSLCAP00010034930	RING-type domain-containing protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.885
ENSLCAP00010058335	ENSLCAP00010034930	ENSLCAP00010058335	ENSLCAP00010034930	Uncharacterized protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.885
ENSLCAP00010059112	LOC108880505	ENSLCAP00010059112	ENSLCAP00010018598	Caspase 8, apoptosis-related cysteine peptidase, like 2; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.996
LOC108880505	ENSLCAP00010008403	ENSLCAP00010018598	ENSLCAP00010008403	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase C14A family.	0.972
LOC108880505	ENSLCAP00010059112	ENSLCAP00010018598	ENSLCAP00010059112	Uncharacterized protein.	Caspase 8, apoptosis-related cysteine peptidase, like 2; Belongs to the peptidase C14A family.	0.996
LOC108896760	ENSLCAP00010034930	ENSLCAP00010029572	ENSLCAP00010034930	Uncharacterized protein.	RanBP-type and C3HC4-type zinc finger containing 1.	0.885