(9 nodes) BRCA1-A complex network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fam175a	Abraxas 1, BRCA1 A complex subunit. (252 aa)
	LOC108889333	MPN domain-containing protein. (260 aa)
	Bre	BRISC and BRCA1 A complex member 2. (383 aa)
	ENSLCAP00010046942	Reverse transcriptase domain-containing protein. (1107 aa)
	ENSLCAP00010046789	Uncharacterized protein. (536 aa)
	LOC108880436	Uncharacterized protein. (814 aa)
	BRCC3	Lys-63-specific deubiquitinase BRCC36. (260 aa)
	brca1	Uncharacterized protein. (1411 aa)
	babam1	Uncharacterized protein. (377 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRCC3	Bre	ENSLCAP00010034116	ENSLCAP00010047145	Lys-63-specific deubiquitinase BRCC36.	BRISC and BRCA1 A complex member 2.	0.983
BRCC3	ENSLCAP00010046789	ENSLCAP00010034116	ENSLCAP00010046789	Lys-63-specific deubiquitinase BRCC36.	Uncharacterized protein.	0.957
BRCC3	ENSLCAP00010046942	ENSLCAP00010034116	ENSLCAP00010046942	Lys-63-specific deubiquitinase BRCC36.	Reverse transcriptase domain-containing protein.	0.935
BRCC3	Fam175a	ENSLCAP00010034116	ENSLCAP00010022389	Lys-63-specific deubiquitinase BRCC36.	Abraxas 1, BRCA1 A complex subunit.	0.434
BRCC3	LOC108880436	ENSLCAP00010034116	ENSLCAP00010043080	Lys-63-specific deubiquitinase BRCC36.	Uncharacterized protein.	0.857
BRCC3	babam1	ENSLCAP00010034116	ENSLCAP00010015152	Lys-63-specific deubiquitinase BRCC36.	Uncharacterized protein.	0.983
BRCC3	brca1	ENSLCAP00010034116	ENSLCAP00010006276	Lys-63-specific deubiquitinase BRCC36.	Uncharacterized protein.	0.895
Bre	BRCC3	ENSLCAP00010047145	ENSLCAP00010034116	BRISC and BRCA1 A complex member 2.	Lys-63-specific deubiquitinase BRCC36.	0.983
Bre	ENSLCAP00010046789	ENSLCAP00010047145	ENSLCAP00010046789	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.982
Bre	ENSLCAP00010046942	ENSLCAP00010047145	ENSLCAP00010046942	BRISC and BRCA1 A complex member 2.	Reverse transcriptase domain-containing protein.	0.974
Bre	Fam175a	ENSLCAP00010047145	ENSLCAP00010022389	BRISC and BRCA1 A complex member 2.	Abraxas 1, BRCA1 A complex subunit.	0.520
Bre	LOC108880436	ENSLCAP00010047145	ENSLCAP00010043080	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.868
Bre	LOC108889333	ENSLCAP00010047145	ENSLCAP00010029669	BRISC and BRCA1 A complex member 2.	MPN domain-containing protein.	0.983
Bre	babam1	ENSLCAP00010047145	ENSLCAP00010015152	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.999
Bre	brca1	ENSLCAP00010047145	ENSLCAP00010006276	BRISC and BRCA1 A complex member 2.	Uncharacterized protein.	0.926
ENSLCAP00010046789	BRCC3	ENSLCAP00010046789	ENSLCAP00010034116	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.957
ENSLCAP00010046789	Bre	ENSLCAP00010046789	ENSLCAP00010047145	Uncharacterized protein.	BRISC and BRCA1 A complex member 2.	0.982
ENSLCAP00010046789	Fam175a	ENSLCAP00010046789	ENSLCAP00010022389	Uncharacterized protein.	Abraxas 1, BRCA1 A complex subunit.	0.505
ENSLCAP00010046789	LOC108880436	ENSLCAP00010046789	ENSLCAP00010043080	Uncharacterized protein.	Uncharacterized protein.	0.872
ENSLCAP00010046789	LOC108889333	ENSLCAP00010046789	ENSLCAP00010029669	Uncharacterized protein.	MPN domain-containing protein.	0.957