(17 nodes) Regulation of protein deubiquitination network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010004526	OTU domain-containing protein. (253 aa)
	LOC108883996	C3H1-type domain-containing protein. (664 aa)
	ENSLCAP00010016623	TNFAIP3 interacting protein 1. (547 aa)
	LOC108882654	E3 ubiquitin-protein ligase. (887 aa)
	ENSLCAP00010022551	Uncharacterized protein. (360 aa)
	LOC108898754	C3H1-type domain-containing protein. (626 aa)
	nop53	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (465 aa)
	ENSLCAP00010033183	Deoxyribonuclease; Belongs to the DNase I family. (288 aa)
	LOC108902110	E3 ubiquitin-protein ligase. (866 aa)
	wdr20	WD_REPEATS_REGION domain-containing protein. (613 aa)
	ENSLCAP00010044994	WD repeat domain 20b. (607 aa)
	Ubxn1	UBX domain protein 1. (327 aa)
	ENSLCAP00010053976	Uncharacterized protein. (294 aa)
	LOC108872702	WD_REPEATS_REGION domain-containing protein. (683 aa)
	tank	TBD domain-containing protein. (534 aa)
	LOC108874758	Endo/exonuclease/phosphatase domain-containing protein. (328 aa)
	Sart3	Uncharacterized protein. (895 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010053976	tank	ENSLCAP00010053976	ENSLCAP00010054549	Uncharacterized protein.	TBD domain-containing protein.	0.491
LOC108882654	LOC108902110	ENSLCAP00010016736	ENSLCAP00010034584	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
LOC108883996	tank	ENSLCAP00010008366	ENSLCAP00010054549	C3H1-type domain-containing protein.	TBD domain-containing protein.	0.491
LOC108898754	tank	ENSLCAP00010024501	ENSLCAP00010054549	C3H1-type domain-containing protein.	TBD domain-containing protein.	0.500
LOC108902110	LOC108882654	ENSLCAP00010034584	ENSLCAP00010016736	E3 ubiquitin-protein ligase.	E3 ubiquitin-protein ligase.	0.900
tank	ENSLCAP00010053976	ENSLCAP00010054549	ENSLCAP00010053976	TBD domain-containing protein.	Uncharacterized protein.	0.491
tank	LOC108883996	ENSLCAP00010054549	ENSLCAP00010008366	TBD domain-containing protein.	C3H1-type domain-containing protein.	0.491
tank	LOC108898754	ENSLCAP00010054549	ENSLCAP00010024501	TBD domain-containing protein.	C3H1-type domain-containing protein.	0.500