69 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSLCAP00010006129	Centrosomal protein 290. (2281 aa)
	exoc4	Sec8_exocyst domain-containing protein. (982 aa)
	ENSLCAP00010004060	USO1 vesicle transport factor. (936 aa)
	Rab3c	RAB3C, member RAS oncogene family. (225 aa)
	snap29	Uncharacterized protein. (259 aa)
	stx10	t-SNARE coiled-coil homology domain-containing protein. (247 aa)
	ENSLCAP00010034795	RAB3D, member RAS oncogene family, b. (224 aa)
	LOC108884188	Uncharacterized protein. (206 aa)
	UNC13A	Unc-13 homolog A. (1623 aa)
	ENSLCAP00010037720	Uncharacterized protein. (1486 aa)
	tsnare1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (287 aa)
	RAB15	Uncharacterized protein. (212 aa)
	stx7	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (257 aa)
	LOC108902008	Uncharacterized protein. (567 aa)
	Vps18	Vacuolar protein sorting 18 homolog (S. cerevisiae). (972 aa)
	ENSLCAP00010042231	t-SNARE coiled-coil homology domain-containing protein. (307 aa)
	ENSLCAP00010042238	Syntaxin 11a. (276 aa)
	stx5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (333 aa)
	UNC13C	Unc-13 homolog C. (2568 aa)
	gramd2a	GRAM domain-containing protein. (362 aa)
	LOC108883661	Uncharacterized protein. (219 aa)
	stxbp3	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (593 aa)
	ENSLCAP00010047160	Syntaxin 1B; Belongs to the syntaxin family. (315 aa)
	ENSLCAP00010047272	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (282 aa)
	exoc2	Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (957 aa)
	ENSLCAP00010048830	Extended synaptotagmin-like protein 1b. (1793 aa)
	ENSLCAP00010049283	Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family. (590 aa)
	LOC108893603	GRAM domain-containing protein. (320 aa)
	ENSLCAP00010049422	Extended synaptotagmin-like protein 1a. (947 aa)
	STX19	t-SNARE coiled-coil homology domain-containing protein. (302 aa)
	pacs2	Uncharacterized protein. (890 aa)
	esyt2	Uncharacterized protein. (927 aa)
	LOC108878442	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (293 aa)
	ENSLCAP00010052233	Syntaxin binding protein 1b; Belongs to the STXBP/unc-18/SEC1 family. (586 aa)
	Stx8	Syntaxin 8. (242 aa)
	stxbp2	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (595 aa)
	rab12	Uncharacterized protein. (242 aa)
	LOC108875901	Uncharacterized protein. (221 aa)
	rab13	Uncharacterized protein. (200 aa)
	stx6	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (255 aa)
	stx16	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	LOC108887266	Uncharacterized protein. (212 aa)
	rab8a	Uncharacterized protein. (206 aa)
	cep83	Uncharacterized protein. (721 aa)
	atg14	Galectin domain-containing protein. (555 aa)
	LOC108878720	V-SNARE coiled-coil homology domain-containing protein. (125 aa)
	ENSLCAP00010059397	Uncharacterized protein. (103 aa)
	ENSLCAP00010060265	Extended synaptotagmin-like protein 3. (914 aa)
	vps11	Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family. (926 aa)
	LOC108883448	Uncharacterized protein. (232 aa)
	LOC108894218	Uncharacterized protein. (206 aa)
	Rabepk	Uncharacterized protein. (340 aa)
	stx12	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	stx1a	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (339 aa)
	ENSLCAP00010013719	Syntaxin 11b, tandem duplicate 2; Belongs to the syntaxin family. (280 aa)
	stx17	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (302 aa)
	Scfd2	Sec1 family domain containing 2. (631 aa)
	ENSLCAP00010031336	RAB3A, member RAS oncogene family, b. (230 aa)
	stx4	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (364 aa)
	rab10	Uncharacterized protein. (203 aa)
	plek	Uncharacterized protein. (351 aa)
	LOC108878291	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (323 aa)
	LOC108886080	Uncharacterized protein. (257 aa)
	ENSLCAP00010010462	Uncharacterized protein. (284 aa)
	ENSLCAP00010008693	Uncharacterized protein. (1603 aa)
	LOC108880940	Uncharacterized protein. (939 aa)
	ENSLCAP00010007118	Uncharacterized protein. (3203 aa)
	ENSLCAP00010006355	Syntaxin 2a. (223 aa)
	ENSLCAP00010032246	Battenin. (378 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010004060	ENSLCAP00010010462	ENSLCAP00010004060	ENSLCAP00010010462	USO1 vesicle transport factor.	Uncharacterized protein.	0.573
ENSLCAP00010004060	cep83	ENSLCAP00010004060	ENSLCAP00010058923	USO1 vesicle transport factor.	Uncharacterized protein.	0.573
ENSLCAP00010004060	stx12	ENSLCAP00010004060	ENSLCAP00010015807	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
ENSLCAP00010004060	stx17	ENSLCAP00010004060	ENSLCAP00010012155	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.681
ENSLCAP00010004060	stx5	ENSLCAP00010004060	ENSLCAP00010042868	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.996
ENSLCAP00010004060	stx7	ENSLCAP00010004060	ENSLCAP00010041786	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
ENSLCAP00010004060	tsnare1	ENSLCAP00010004060	ENSLCAP00010040747	USO1 vesicle transport factor.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.518
ENSLCAP00010006129	ENSLCAP00010010462	ENSLCAP00010006129	ENSLCAP00010010462	Centrosomal protein 290.	Uncharacterized protein.	0.400
ENSLCAP00010006129	LOC108884188	ENSLCAP00010006129	ENSLCAP00010036539	Centrosomal protein 290.	Uncharacterized protein.	0.482
ENSLCAP00010006129	LOC108886080	ENSLCAP00010006129	ENSLCAP00010022881	Centrosomal protein 290.	Uncharacterized protein.	0.482
ENSLCAP00010006129	LOC108887266	ENSLCAP00010006129	ENSLCAP00010055474	Centrosomal protein 290.	Uncharacterized protein.	0.439
ENSLCAP00010006129	LOC108894218	ENSLCAP00010006129	ENSLCAP00010017410	Centrosomal protein 290.	Uncharacterized protein.	0.482
ENSLCAP00010006129	RAB15	ENSLCAP00010006129	ENSLCAP00010041365	Centrosomal protein 290.	Uncharacterized protein.	0.439
ENSLCAP00010006129	cep83	ENSLCAP00010006129	ENSLCAP00010058923	Centrosomal protein 290.	Uncharacterized protein.	0.437
ENSLCAP00010006129	rab10	ENSLCAP00010006129	ENSLCAP00010025585	Centrosomal protein 290.	Uncharacterized protein.	0.439
ENSLCAP00010006129	rab13	ENSLCAP00010006129	ENSLCAP00010054208	Centrosomal protein 290.	Uncharacterized protein.	0.439
ENSLCAP00010006129	rab8a	ENSLCAP00010006129	ENSLCAP00010057947	Centrosomal protein 290.	Uncharacterized protein.	0.482
ENSLCAP00010006355	ENSLCAP00010007118	ENSLCAP00010006355	ENSLCAP00010007118	Syntaxin 2a.	Uncharacterized protein.	0.439
ENSLCAP00010006355	ENSLCAP00010008693	ENSLCAP00010006355	ENSLCAP00010008693	Syntaxin 2a.	Uncharacterized protein.	0.439
ENSLCAP00010006355	ENSLCAP00010037720	ENSLCAP00010006355	ENSLCAP00010037720	Syntaxin 2a.	Uncharacterized protein.	0.439