10 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108893847	Uncharacterized protein. (216 aa)
	Pigt	Phosphatidylinositol glycan anchor biosynthesis, class T. (660 aa)
	casp6	Uncharacterized protein; Belongs to the peptidase C14A family. (301 aa)
	Cast	Uncharacterized protein. (1120 aa)
	CAPNS1	Uncharacterized protein. (216 aa)
	Gpaa1	Glycosylphosphatidylinositol anchor attachment 1. (627 aa)
	pigs	Uncharacterized protein. (574 aa)
	Pigk	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family. (379 aa)
	casp2	Uncharacterized protein; Belongs to the peptidase C14A family. (468 aa)
	pigu	Uncharacterized protein. (435 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAPNS1	Cast	ENSLCAP00010019500	ENSLCAP00010016378	Uncharacterized protein.	Uncharacterized protein.	0.816
Cast	CAPNS1	ENSLCAP00010016378	ENSLCAP00010019500	Uncharacterized protein.	Uncharacterized protein.	0.816
Cast	LOC108893847	ENSLCAP00010016378	ENSLCAP00010029698	Uncharacterized protein.	Uncharacterized protein.	0.816
Gpaa1	Pigk	ENSLCAP00010019875	ENSLCAP00010054970	Glycosylphosphatidylinositol anchor attachment 1.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
Gpaa1	Pigt	ENSLCAP00010019875	ENSLCAP00010006976	Glycosylphosphatidylinositol anchor attachment 1.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.999
Gpaa1	pigs	ENSLCAP00010019875	ENSLCAP00010021641	Glycosylphosphatidylinositol anchor attachment 1.	Uncharacterized protein.	0.999
Gpaa1	pigu	ENSLCAP00010019875	ENSLCAP00010022956	Glycosylphosphatidylinositol anchor attachment 1.	Uncharacterized protein.	0.998
LOC108893847	Cast	ENSLCAP00010029698	ENSLCAP00010016378	Uncharacterized protein.	Uncharacterized protein.	0.816
Pigk	Gpaa1	ENSLCAP00010054970	ENSLCAP00010019875	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Glycosylphosphatidylinositol anchor attachment 1.	0.999
Pigk	Pigt	ENSLCAP00010054970	ENSLCAP00010006976	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.999
Pigk	pigs	ENSLCAP00010054970	ENSLCAP00010021641	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.999
Pigk	pigu	ENSLCAP00010054970	ENSLCAP00010022956	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	Uncharacterized protein.	0.998
Pigt	Gpaa1	ENSLCAP00010006976	ENSLCAP00010019875	Phosphatidylinositol glycan anchor biosynthesis, class T.	Glycosylphosphatidylinositol anchor attachment 1.	0.999
Pigt	Pigk	ENSLCAP00010006976	ENSLCAP00010054970	Phosphatidylinositol glycan anchor biosynthesis, class T.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
Pigt	pigs	ENSLCAP00010006976	ENSLCAP00010021641	Phosphatidylinositol glycan anchor biosynthesis, class T.	Uncharacterized protein.	0.999
Pigt	pigu	ENSLCAP00010006976	ENSLCAP00010022956	Phosphatidylinositol glycan anchor biosynthesis, class T.	Uncharacterized protein.	0.998
pigs	Gpaa1	ENSLCAP00010021641	ENSLCAP00010019875	Uncharacterized protein.	Glycosylphosphatidylinositol anchor attachment 1.	0.999
pigs	Pigk	ENSLCAP00010021641	ENSLCAP00010054970	Uncharacterized protein.	GPI-anchor transamidase; Mediates GPI anchoring in the endoplasmic reticulum, by replacing a protein's C-terminal GPI attachment signal peptide with a pre-assembled GPI. During this transamidation reaction, the GPI transamidase forms a carbonyl intermediate with the substrate protein. Belongs to the peptidase C13 family.	0.999
pigs	Pigt	ENSLCAP00010021641	ENSLCAP00010006976	Uncharacterized protein.	Phosphatidylinositol glycan anchor biosynthesis, class T.	0.999
pigs	pigu	ENSLCAP00010021641	ENSLCAP00010022956	Uncharacterized protein.	Uncharacterized protein.	0.998