5 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108877642	Uncharacterized protein; Belongs to the parvalbumin family. (127 aa)
	ENSLCAP00010027430	Uncharacterized protein. (1508 aa)
	ENSLCAP00010056253	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b. (1429 aa)
	ENSLCAP00010019545	Brevican. (1118 aa)
	ENSLCAP00010009831	Uncharacterized protein. (856 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ENSLCAP00010009831	ENSLCAP00010027430	Uncharacterized protein.	Uncharacterized protein.	0.459
ENSLCAP00010009831	ENSLCAP00010056253	Uncharacterized protein.	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b.	0.459
ENSLCAP00010019545	ENSLCAP00010027430	Brevican.	Uncharacterized protein.	0.459
ENSLCAP00010019545	ENSLCAP00010056253	Brevican.	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b.	0.459
ENSLCAP00010027430	ENSLCAP00010009831	Uncharacterized protein.	Uncharacterized protein.	0.459
ENSLCAP00010027430	ENSLCAP00010019545	Uncharacterized protein.	Brevican.	0.459
ENSLCAP00010056253	ENSLCAP00010009831	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b.	Uncharacterized protein.	0.459
ENSLCAP00010056253	ENSLCAP00010019545	Protein tyrosine phosphatase, receptor-type, Z polypeptide 1b.	Brevican.	0.459