7 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108881412	Uncharacterized protein. (402 aa)
	LOC108874918	Uncharacterized protein. (402 aa)
	ENSLCAP00010005935	Guanine nucleotide binding protein (G protein), q polypeptide. (374 aa)
	LOC108874116	Uncharacterized protein. (354 aa)
	ENSLCAP00010060883	Uncharacterized protein. (382 aa)
	LOC108878372	Uncharacterized protein. (354 aa)
	LOC108881409	Uncharacterized protein. (369 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010005935	LOC108881412	ENSLCAP00010005935	ENSLCAP00010058221	Guanine nucleotide binding protein (G protein), q polypeptide.	Uncharacterized protein.	0.901
ENSLCAP00010060883	LOC108881409	ENSLCAP00010060883	ENSLCAP00010058210	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC108874918	LOC108881409	ENSLCAP00010031180	ENSLCAP00010058210	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC108878372	LOC108881409	ENSLCAP00010060882	ENSLCAP00010058210	Uncharacterized protein.	Uncharacterized protein.	0.473
LOC108881409	ENSLCAP00010060883	ENSLCAP00010058210	ENSLCAP00010060883	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC108881409	LOC108874918	ENSLCAP00010058210	ENSLCAP00010031180	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC108881409	LOC108878372	ENSLCAP00010058210	ENSLCAP00010060882	Uncharacterized protein.	Uncharacterized protein.	0.473
LOC108881409	LOC108881412	ENSLCAP00010058210	ENSLCAP00010058221	Uncharacterized protein.	Uncharacterized protein.	0.475
LOC108881412	ENSLCAP00010005935	ENSLCAP00010058221	ENSLCAP00010005935	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), q polypeptide.	0.901
LOC108881412	LOC108881409	ENSLCAP00010058221	ENSLCAP00010058210	Uncharacterized protein.	Uncharacterized protein.	0.475