32 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108889169	TGF_BETA_2 domain-containing protein. (396 aa)
	ENSLCAP00010036563	Anti-dorsalizing morphogenic protein. (375 aa)
	bmp4	TGF_BETA_2 domain-containing protein. (457 aa)
	ENSLCAP00010037582	TGFb_propeptide domain-containing protein. (251 aa)
	ENSLCAP00010040901	Bone morphogenetic protein 16. (394 aa)
	LOC108873145	Myostatin-2. (359 aa)
	bmp7	TGF_BETA_2 domain-containing protein. (427 aa)
	tgfb3	Transforming growth factor beta; Belongs to the TGF-beta family. (405 aa)
	LOC108872574	Transforming growth factor beta; Belongs to the TGF-beta family. (420 aa)
	nodal	TGF_BETA_2 domain-containing protein. (398 aa)
	ENSLCAP00010043543	Inhibin subunit beta Aa. (398 aa)
	ENSLCAP00010045556	Bone morphogenetic protein 7a. (415 aa)
	ENSLCAP00010047527	TGFb_propeptide domain-containing protein. (130 aa)
	Bmp8a	Bone morphogenetic protein 8a. (443 aa)
	ENSLCAP00010048214	Growth differentiation factor 2. (403 aa)
	mstn	TGF_BETA_2 domain-containing protein. (376 aa)
	LOC108898929	TGF_BETA_2 domain-containing protein. (389 aa)
	Bmp5	Bone morphogenetic protein 5. (460 aa)
	LOC108878075	TGF_BETA_2 domain-containing protein. (414 aa)
	ENSLCAP00010001030	TGFb_propeptide domain-containing protein. (246 aa)
	ENSLCAP00010004949	Growth differentiation factor 5. (447 aa)
	ENSLCAP00010005369	TGF_BETA_2 domain-containing protein. (379 aa)
	tgfb2	Transforming growth factor beta; Belongs to the TGF-beta family. (444 aa)
	LOC108895789	Left-right determination factor. (359 aa)
	LOC108888971	TGF_BETA_2 domain-containing protein. (463 aa)
	LOC108876160	Transforming growth factor beta; Belongs to the TGF-beta family. (386 aa)
	TGFB3	Transforming growth factor beta; Belongs to the TGF-beta family. (408 aa)
	Bmp6	Bone morphogenetic protein 6. (242 aa)
	ENSLCAP00010029218	Growth differentiation factor 6b. (391 aa)
	bmp2	TGF_BETA_2 domain-containing protein. (417 aa)
	bmp10	TGF_BETA_2 domain-containing protein. (491 aa)
	LOC108887645	TGF_BETA_2 domain-containing protein. (453 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Bmp5	ENSLCAP00010040901	ENSLCAP00010059699	ENSLCAP00010040901	Bone morphogenetic protein 5.	Bone morphogenetic protein 16.	0.581
Bmp5	bmp2	ENSLCAP00010059699	ENSLCAP00010029393	Bone morphogenetic protein 5.	TGF_BETA_2 domain-containing protein.	0.598
Bmp5	bmp4	ENSLCAP00010059699	ENSLCAP00010036312	Bone morphogenetic protein 5.	TGF_BETA_2 domain-containing protein.	0.599
Bmp6	ENSLCAP00010001030	ENSLCAP00010018630	ENSLCAP00010001030	Bone morphogenetic protein 6.	TGFb_propeptide domain-containing protein.	0.902
Bmp6	ENSLCAP00010037582	ENSLCAP00010018630	ENSLCAP00010037582	Bone morphogenetic protein 6.	TGFb_propeptide domain-containing protein.	0.879
Bmp6	ENSLCAP00010040901	ENSLCAP00010018630	ENSLCAP00010040901	Bone morphogenetic protein 6.	Bone morphogenetic protein 16.	0.599
Bmp6	bmp2	ENSLCAP00010018630	ENSLCAP00010029393	Bone morphogenetic protein 6.	TGF_BETA_2 domain-containing protein.	0.595
Bmp6	bmp4	ENSLCAP00010018630	ENSLCAP00010036312	Bone morphogenetic protein 6.	TGF_BETA_2 domain-containing protein.	0.596
ENSLCAP00010001030	Bmp6	ENSLCAP00010001030	ENSLCAP00010018630	TGFb_propeptide domain-containing protein.	Bone morphogenetic protein 6.	0.902
ENSLCAP00010004949	ENSLCAP00010040901	ENSLCAP00010004949	ENSLCAP00010040901	Growth differentiation factor 5.	Bone morphogenetic protein 16.	0.407
ENSLCAP00010004949	bmp2	ENSLCAP00010004949	ENSLCAP00010029393	Growth differentiation factor 5.	TGF_BETA_2 domain-containing protein.	0.407
ENSLCAP00010004949	bmp4	ENSLCAP00010004949	ENSLCAP00010036312	Growth differentiation factor 5.	TGF_BETA_2 domain-containing protein.	0.407
ENSLCAP00010005369	ENSLCAP00010043543	ENSLCAP00010005369	ENSLCAP00010043543	TGF_BETA_2 domain-containing protein.	Inhibin subunit beta Aa.	0.487
ENSLCAP00010005369	LOC108872574	ENSLCAP00010005369	ENSLCAP00010042949	TGF_BETA_2 domain-containing protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.650
ENSLCAP00010005369	LOC108876160	ENSLCAP00010005369	ENSLCAP00010015620	TGF_BETA_2 domain-containing protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.658
ENSLCAP00010005369	LOC108878075	ENSLCAP00010005369	ENSLCAP00010060771	TGF_BETA_2 domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.900
ENSLCAP00010005369	TGFB3	ENSLCAP00010005369	ENSLCAP00010017557	TGF_BETA_2 domain-containing protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.667
ENSLCAP00010005369	nodal	ENSLCAP00010005369	ENSLCAP00010043366	TGF_BETA_2 domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.900
ENSLCAP00010005369	tgfb3	ENSLCAP00010005369	ENSLCAP00010042254	TGF_BETA_2 domain-containing protein.	Transforming growth factor beta; Belongs to the TGF-beta family.	0.667
ENSLCAP00010037582	Bmp6	ENSLCAP00010037582	ENSLCAP00010018630	TGFb_propeptide domain-containing protein.	Bone morphogenetic protein 6.	0.879