13 items (Lates calcarifer) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	smad3	Mothers against decapentaplegic homolog. (449 aa)
	LOC108887878	Mothers against decapentaplegic homolog. (452 aa)
	LOC108887879	Mothers against decapentaplegic homolog. (506 aa)
	LOC108896340	Mothers against decapentaplegic homolog. (616 aa)
	smad7	Mothers against decapentaplegic homolog. (376 aa)
	SMAD4	Mothers against decapentaplegic homolog. (524 aa)
	smad6	Mothers against decapentaplegic homolog. (491 aa)
	LOC108878489	Mothers against decapentaplegic homolog. (467 aa)
	Smad1	Mothers against decapentaplegic homolog. (462 aa)
	smad9	Mothers against decapentaplegic homolog. (469 aa)
	LOC108878855	Mothers against decapentaplegic homolog. (471 aa)
	LOC108886018	Mothers against decapentaplegic homolog. (474 aa)
	ENSLCAP00010001596	Mothers against decapentaplegic homolog. (531 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010001596	LOC108878489	ENSLCAP00010001596	ENSLCAP00010032926	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.980
ENSLCAP00010001596	LOC108878855	ENSLCAP00010001596	ENSLCAP00010054256	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.980
ENSLCAP00010001596	LOC108886018	ENSLCAP00010001596	ENSLCAP00010060462	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.810
ENSLCAP00010001596	LOC108887878	ENSLCAP00010001596	ENSLCAP00010002040	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.810
ENSLCAP00010001596	LOC108887879	ENSLCAP00010001596	ENSLCAP00010002054	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.477
ENSLCAP00010001596	LOC108896340	ENSLCAP00010001596	ENSLCAP00010011045	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.901
ENSLCAP00010001596	SMAD4	ENSLCAP00010001596	ENSLCAP00010013760	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
ENSLCAP00010001596	Smad1	ENSLCAP00010001596	ENSLCAP00010041718	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.981
ENSLCAP00010001596	smad3	ENSLCAP00010001596	ENSLCAP00010026768	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.810
ENSLCAP00010001596	smad6	ENSLCAP00010001596	ENSLCAP00010026438	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.477
ENSLCAP00010001596	smad7	ENSLCAP00010001596	ENSLCAP00010011180	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.477
ENSLCAP00010001596	smad9	ENSLCAP00010001596	ENSLCAP00010052953	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.981
LOC108878489	ENSLCAP00010001596	ENSLCAP00010032926	ENSLCAP00010001596	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.980
LOC108878489	LOC108878855	ENSLCAP00010032926	ENSLCAP00010054256	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.468
LOC108878489	LOC108887879	ENSLCAP00010032926	ENSLCAP00010002054	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.939
LOC108878489	LOC108896340	ENSLCAP00010032926	ENSLCAP00010011045	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.980
LOC108878489	SMAD4	ENSLCAP00010032926	ENSLCAP00010013760	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.980
LOC108878489	Smad1	ENSLCAP00010032926	ENSLCAP00010041718	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.470
LOC108878489	smad6	ENSLCAP00010032926	ENSLCAP00010026438	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.939
LOC108878489	smad7	ENSLCAP00010032926	ENSLCAP00010011180	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.939