(36 nodes) TNFR/NGFR cysteine-rich region network (Lates calcarifer)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC108887581	Uncharacterized protein. (333 aa)
	ENSLCAP00010000721	TNFR-Cys domain-containing protein. (197 aa)
	relt	TNFR-Cys domain-containing protein. (464 aa)
	ENSLCAP00010001999	TNFR-Cys domain-containing protein. (155 aa)
	ENSLCAP00010002010	Uncharacterized protein. (194 aa)
	TNFRSF11B	TNFR-Cys domain-containing protein. (424 aa)
	LOC108889340	Uncharacterized protein. (290 aa)
	ENSLCAP00010005900	Proprotein convertase subtilisin/kexin type 5a. (1821 aa)
	ENSLCAP00010012586	Tumor necrosis factor receptor superfamily, member a. (419 aa)
	ENSLCAP00010013205	Nerve growth factor receptor a (TNFR superfamily, member 16). (268 aa)
	fas	Uncharacterized protein. (324 aa)
	ENSLCAP00010016091	Uncharacterized protein. (258 aa)
	LOC108889976	TNFR-Cys domain-containing protein. (277 aa)
	ENSLCAP00010016117	Si:ch73-361p23.3. (274 aa)
	LOC108889978	TNFR-Cys domain-containing protein. (275 aa)
	LOC108899603	Uncharacterized protein. (263 aa)
	ENSLCAP00010016269	TNFR-Cys domain-containing protein. (229 aa)
	igflr1	TNFR-Cys domain-containing protein. (333 aa)
	ENSLCAP00010019603	Uncharacterized protein. (271 aa)
	ENSLCAP00010023470	Uncharacterized protein. (257 aa)
	ENSLCAP00010023569	TNFR-Cys domain-containing protein. (241 aa)
	ENSLCAP00010024056	Tumor necrosis factor receptor superfamily, member 1a. (440 aa)
	LOC108882155	TNFR-Cys domain-containing protein. (279 aa)
	LOC108891901	Uncharacterized protein. (396 aa)
	LOC108873448	Uncharacterized protein. (430 aa)
	ENSLCAP00010035354	TNFR-Cys domain-containing protein. (95 aa)
	ENSLCAP00010037179	Uncharacterized protein. (251 aa)
	ENSLCAP00010040975	Uncharacterized protein. (225 aa)
	tnfrsf21	Uncharacterized protein. (694 aa)
	ENSLCAP00010043893	TNFR-Cys domain-containing protein. (284 aa)
	ENSLCAP00010049361	Uncharacterized protein. (229 aa)
	LOC108899907	Uncharacterized protein. (482 aa)
	ENSLCAP00010054907	TNFR-Cys domain-containing protein. (380 aa)
	tnfrsf19	Uncharacterized protein. (379 aa)
	ENSLCAP00010058824	Hematopoietic death receptor. (406 aa)
	LOC108891726	Uncharacterized protein. (433 aa)

Your Current Organism:

Lates calcarifer

NCBI taxonomy Id: 8187
Other names: Asian seabass, Holocentrus calcarifer, L. calcarifer, barramundi, barramundi perch

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSLCAP00010012586	ENSLCAP00010024056	ENSLCAP00010012586	ENSLCAP00010024056	Tumor necrosis factor receptor superfamily, member a.	Tumor necrosis factor receptor superfamily, member 1a.	0.558
ENSLCAP00010012586	ENSLCAP00010058824	ENSLCAP00010012586	ENSLCAP00010058824	Tumor necrosis factor receptor superfamily, member a.	Hematopoietic death receptor.	0.785
ENSLCAP00010012586	fas	ENSLCAP00010012586	ENSLCAP00010015051	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.812
ENSLCAP00010012586	tnfrsf21	ENSLCAP00010012586	ENSLCAP00010041909	Tumor necrosis factor receptor superfamily, member a.	Uncharacterized protein.	0.435
ENSLCAP00010016091	ENSLCAP00010024056	ENSLCAP00010016091	ENSLCAP00010024056	Uncharacterized protein.	Tumor necrosis factor receptor superfamily, member 1a.	0.668
ENSLCAP00010016091	ENSLCAP00010054907	ENSLCAP00010016091	ENSLCAP00010054907	Uncharacterized protein.	TNFR-Cys domain-containing protein.	0.450
ENSLCAP00010016269	ENSLCAP00010054907	ENSLCAP00010016269	ENSLCAP00010054907	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.514
ENSLCAP00010024056	ENSLCAP00010012586	ENSLCAP00010024056	ENSLCAP00010012586	Tumor necrosis factor receptor superfamily, member 1a.	Tumor necrosis factor receptor superfamily, member a.	0.558
ENSLCAP00010024056	ENSLCAP00010016091	ENSLCAP00010024056	ENSLCAP00010016091	Tumor necrosis factor receptor superfamily, member 1a.	Uncharacterized protein.	0.668
ENSLCAP00010024056	ENSLCAP00010054907	ENSLCAP00010024056	ENSLCAP00010054907	Tumor necrosis factor receptor superfamily, member 1a.	TNFR-Cys domain-containing protein.	0.616
ENSLCAP00010024056	LOC108882155	ENSLCAP00010024056	ENSLCAP00010026505	Tumor necrosis factor receptor superfamily, member 1a.	TNFR-Cys domain-containing protein.	0.502
ENSLCAP00010024056	LOC108889978	ENSLCAP00010024056	ENSLCAP00010016120	Tumor necrosis factor receptor superfamily, member 1a.	TNFR-Cys domain-containing protein.	0.668
ENSLCAP00010024056	fas	ENSLCAP00010024056	ENSLCAP00010015051	Tumor necrosis factor receptor superfamily, member 1a.	Uncharacterized protein.	0.703
ENSLCAP00010024056	tnfrsf21	ENSLCAP00010024056	ENSLCAP00010041909	Tumor necrosis factor receptor superfamily, member 1a.	Uncharacterized protein.	0.435
ENSLCAP00010054907	ENSLCAP00010016091	ENSLCAP00010054907	ENSLCAP00010016091	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.450
ENSLCAP00010054907	ENSLCAP00010016269	ENSLCAP00010054907	ENSLCAP00010016269	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.514
ENSLCAP00010054907	ENSLCAP00010024056	ENSLCAP00010054907	ENSLCAP00010024056	TNFR-Cys domain-containing protein.	Tumor necrosis factor receptor superfamily, member 1a.	0.616
ENSLCAP00010054907	LOC108882155	ENSLCAP00010054907	ENSLCAP00010026505	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.600
ENSLCAP00010054907	LOC108889978	ENSLCAP00010054907	ENSLCAP00010016120	TNFR-Cys domain-containing protein.	TNFR-Cys domain-containing protein.	0.938
ENSLCAP00010054907	fas	ENSLCAP00010054907	ENSLCAP00010015051	TNFR-Cys domain-containing protein.	Uncharacterized protein.	0.575